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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100785331   Brix domain-containing protein 
 gma-r.7   100785331   Brix domain-containing protein 
 gma-m.5   100785331   Brix domain-containing protein 
 gma-u.5   100791194   ribosome production factor 1 
 mtr-u.5   25500582   ribosome production factor 1 
 ppo-u.5   7487755   uncharacterized LOC7487755 
 ppo-u.5   7455374   uncharacterized LOC7455374 
 ath-u.5   MEE49   Ribosomal RNA processing Brix domain protein 
 bra-r.6   103836813   ribosome production factor 1 
 vvi-u.5   100263155   uncharacterized LOC100263155 
 vvi-u.5   100266185   uncharacterized LOC100266185 
 ghi-r.1   107954412   ribosome production factor 1 
 ghi-r.1   107937025   ribosome production factor 1 
 bna-r.1   106426594   ribosome production factor 1 
 bna-r.1   125577654   ribosome production factor 1-like 
 cit-r.1   102608771   uncharacterized LOC102608771 
 sly-u.5   101259402   uncharacterized LOC101259402 
 sot-r.1   102599817   ribosome production factor 1-like 
 nta-r.1   107817240   uncharacterized LOC107817240 
 nta-r.1   107780918   uncharacterized LOC107780918 
 osa-u.5   4340048   uncharacterized LOC4340048 
 zma-u.5   100273986   uncharacterized LOC100273986 
 tae-r.2   123166624   ribosome production factor 1 
 tae-r.2   123087878   ribosome production factor 1 
 tae-r.2   123150023   ribosome production factor 1 
 hvu-r.1   123411263   ribosome production factor 1-like 
 hvu-r.1   123408094   ribosome production factor 1-like 
 sbi-r.1   8068415   ribosome production factor 1 
 bdi-r.1   100833727   ribosome production factor 1 
 cre-r.1   CHLRE_04g218850v5   uncharacterized protein 

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Top 50 coexpressed genes to 100785331 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100785331 (gma-u.5 coexpression data)

CoexMap"100785331"


gmaLOC100785331 | Entrez gene ID : 100785331      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 1 1 2 2 2 1 1 1 2 1 1 3 2 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (59 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (75 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (41 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (18 genes)  IEA  
Protein NP_001242604.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  mito 1,  pero 1,  cysk 1  (predict for NP_001242604.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001242604.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100785331
gma-r.7
for
100785331
gma-m.5
for
100785331
gma-u.5
for
100791194
mtr-u.5
for
25500582
ppo-u.5
for
7487755
ppo-u.5
for
7455374
ath-u.5
for
MEE49
bra-r.6
for
103836813
vvi-u.5
for
100263155
vvi-u.5
for
100266185
ghi-r.1
for
107954412
ghi-r.1
for
107937025
bna-r.1
for
106426594
bna-r.1
for
125577654
cit-r.1
for
102608771
sly-u.5
for
101259402
sot-r.1
for
102599817
nta-r.1
for
107817240
nta-r.1
for
107780918
osa-u.5
for
4340048
zma-u.5
for
100273986
tae-r.2
for
123166624
tae-r.2
for
123087878
tae-r.2
for
123150023
hvu-r.1
for
123411263
hvu-r.1
for
123408094
sbi-r.1
for
8068415
bdi-r.1
for
100833727
cre-r.1
for
CHLRE_04g218850v5


Ortholog ID: 8551
Species gma gma mtr ppo ppo ath bra vvi vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC100785331 LOC100791194 LOC25500582 LOC7487755 LOC7455374 MEE49 LOC103836813 LOC100263155 LOC100266185 LOC107954412 LOC107937025 LOC106426594 LOC125577654 LOC102608771 LOC101259402 LOC102599817 LOC107817240 LOC107780918 LOC4340048 LOC100273986 LOC123166624 LOC123087878 LOC123150023 LOC123411263 LOC123408094 LOC8068415 LOC100833727 CHLRE_04g218850v5
Function* Brix domain-containing protein ribosome production factor 1 ribosome production factor 1 uncharacterized LOC7487755 uncharacterized LOC7455374 Ribosomal RNA processing Brix domain protein ribosome production factor 1 uncharacterized LOC100263155 uncharacterized LOC100266185 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like uncharacterized LOC102608771 uncharacterized LOC101259402 ribosome production factor 1-like uncharacterized LOC107817240 uncharacterized LOC107780918 uncharacterized LOC4340048 uncharacterized LOC100273986 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like ribosome production factor 1-like ribosome production factor 1 ribosome production factor 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100785331 100791194 25500582 7487755 7455374 828136 103836813 100263155 100266185 107954412 107937025 106426594 125577654 102608771 101259402 102599817 107817240 107780918 4340048 100273986 123166624 123087878 123150023 123411263 123408094 8068415 100833727 5717842
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