ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	125577654	ribosome production factor 1-like
ath-u.5	MEE49	Ribosomal RNA processing Brix domain protein
gma-u.5	100791194	ribosome production factor 1
gma-u.5	100785331	Brix domain-containing protein
vvi-u.5	100263155	uncharacterized LOC100263155
vvi-u.5	100266185	uncharacterized LOC100266185
ppo-u.5	7455374	uncharacterized LOC7455374
ppo-u.5	7487755	uncharacterized LOC7487755
mtr-u.5	25500582	ribosome production factor 1
sly-u.5	101259402	uncharacterized LOC101259402
osa-u.5	4340048	uncharacterized LOC4340048
zma-u.5	100273986	uncharacterized LOC100273986

functional annotation

KEGG

GO BP

GO:0000460 [list] [network] maturation of 5.8S rRNA	(106 genes)	IEA
GO:0000470 [list] [network] maturation of LSU-rRNA	(106 genes)	IEA

GO CC

GO:0030687 [list] [network] preribosome, large subunit precursor	(103 genes)	IEA
GO:0005730 [list] [network] nucleolus	(615 genes)	IEA

GO MF

GO:0042134 [list] [network] rRNA primary transcript binding

(8 genes)

IEA

Protein

XP_048595152.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3

(predict for XP_048595152.1)

Subcellular
localization
TargetP

other 9

(predict for XP_048595152.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125577654	ath-u.5 for MEE49	gma-u.5 for 100791194	gma-u.5 for 100785331	vvi-u.5 for 100263155	vvi-u.5 for 100266185	ppo-u.5 for 7455374	ppo-u.5 for 7487755	mtr-u.5 for 25500582	sly-u.5 for 101259402	osa-u.5 for 4340048	zma-u.5 for 100273986

Ortholog ID: 8551

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MEE49

Function^*

ribosome production factor 1-like

ribosome production factor 1

Ribosomal RNA processing Brix domain protein

ribosome production factor 1

uncharacterized LOC102608771

ribosome production factor 1

Brix domain-containing protein

uncharacterized LOC100266185

uncharacterized LOC100263155

uncharacterized LOC7487755

uncharacterized LOC7455374

ribosome production factor 1

uncharacterized LOC101259402

ribosome production factor 1-like

uncharacterized LOC107817240

uncharacterized LOC107780918

uncharacterized LOC4340048

uncharacterized LOC100273986

ribosome production factor 1

ribosome production factor 1-like

ribosome production factor 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	3
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03010	Ribosome	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4
cre03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

125577654

106426594

103836813

828136

107937025

107954412

102608771

100791194

100785331

100266185

100263155

7487755

7455374

25500582

101259402

102599817

107817240

107780918

4340048

100273986

123087878

123166624

123411263

123408094

8068415

100833727

5717842

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 125577654 (bna-r.1 coexpression data)

Top 50 enrichment test to 125577654 (bna-r.1 coexpression data)


Species	bna	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	sbi	ghi	sot	nta	cre	tae
Paralog	1	1	2	2	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125577654 (bna-r.1 coexpression data)

Top 50 enrichment test to 125577654 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**