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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107954412   ribosome production factor 1 
 ghi-r.1   107937025   ribosome production factor 1 
 ath-u.5   MEE49   Ribosomal RNA processing Brix domain protein 
 bra-r.6   103836813   ribosome production factor 1 
 bna-r.1   106426594   ribosome production factor 1 
 bna-r.1   125577654   ribosome production factor 1-like 
 cit-r.1   102608771   uncharacterized LOC102608771 
 gma-u.5   100791194   ribosome production factor 1 
 gma-u.5   100785331   Brix domain-containing protein 
 vvi-u.5   100263155   uncharacterized LOC100263155 
 vvi-u.5   100266185   uncharacterized LOC100266185 
 ppo-u.5   7455374   uncharacterized LOC7455374 
 ppo-u.5   7487755   uncharacterized LOC7487755 
 mtr-u.5   25500582   ribosome production factor 1 
 sly-u.5   101259402   uncharacterized LOC101259402 
 sot-r.1   102599817   ribosome production factor 1-like 
 nta-r.1   107780918   uncharacterized LOC107780918 
 nta-r.1   107817240   uncharacterized LOC107817240 
 osa-u.5   4340048   uncharacterized LOC4340048 
 zma-u.5   100273986   uncharacterized LOC100273986 
 tae-r.2   123087878   ribosome production factor 1 
 tae-r.2   123166624   ribosome production factor 1 
 tae-r.2   123150023   ribosome production factor 1 
 hvu-r.1   123408094   ribosome production factor 1-like 
 hvu-r.1   123411263   ribosome production factor 1-like 
 sbi-r.1   8068415   ribosome production factor 1 
 bdi-r.1   100833727   ribosome production factor 1 
 cre-r.1   CHLRE_04g218850v5   uncharacterized protein 

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Top 50 coexpressed genes to 107954412 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107954412 (ghi-r.1 coexpression data)

CoexMap"107954412"


ghiLOC107954412 | Entrez gene ID : 107954412    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 2 2 1 1 1 2 1 1 3 2 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000460 [list] [network] maturation of 5.8S rRNA  (78 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (98 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (51 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (12 genes)  IEA  
Protein XP_016745443.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_016745443.2)
Subcellular
localization
TargetP
other 9  (predict for XP_016745443.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107954412
ghi-r.1
for
107937025
ath-u.5
for
MEE49
bra-r.6
for
103836813
bna-r.1
for
106426594
bna-r.1
for
125577654
cit-r.1
for
102608771
gma-u.5
for
100791194
gma-u.5
for
100785331
vvi-u.5
for
100263155
vvi-u.5
for
100266185
ppo-u.5
for
7455374
ppo-u.5
for
7487755
mtr-u.5
for
25500582
sly-u.5
for
101259402
sot-r.1
for
102599817
nta-r.1
for
107780918
nta-r.1
for
107817240
osa-u.5
for
4340048
zma-u.5
for
100273986
tae-r.2
for
123087878
tae-r.2
for
123166624
tae-r.2
for
123150023
hvu-r.1
for
123408094
hvu-r.1
for
123411263
sbi-r.1
for
8068415
bdi-r.1
for
100833727
cre-r.1
for
CHLRE_04g218850v5


Ortholog ID: 8551
Species ghi ghi ath bra bna bna cit gma gma vvi vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu hvu sbi bdi cre
Symbol LOC107954412 LOC107937025 MEE49 LOC103836813 LOC106426594 LOC125577654 LOC102608771 LOC100791194 LOC100785331 LOC100263155 LOC100266185 LOC7455374 LOC7487755 LOC25500582 LOC101259402 LOC102599817 LOC107780918 LOC107817240 LOC4340048 LOC100273986 LOC123087878 LOC123166624 LOC123150023 LOC123408094 LOC123411263 LOC8068415 LOC100833727 CHLRE_04g218850v5
Function* ribosome production factor 1 ribosome production factor 1 Ribosomal RNA processing Brix domain protein ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like uncharacterized LOC102608771 ribosome production factor 1 Brix domain-containing protein uncharacterized LOC100263155 uncharacterized LOC100266185 uncharacterized LOC7455374 uncharacterized LOC7487755 ribosome production factor 1 uncharacterized LOC101259402 ribosome production factor 1-like uncharacterized LOC107780918 uncharacterized LOC107817240 uncharacterized LOC4340048 uncharacterized LOC100273986 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like ribosome production factor 1-like ribosome production factor 1 ribosome production factor 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107954412 107937025 828136 103836813 106426594 125577654 102608771 100791194 100785331 100263155 100266185 7455374 7487755 25500582 101259402 102599817 107780918 107817240 4340048 100273986 123087878 123166624 123150023 123408094 123411263 8068415 100833727 5717842
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