ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8068415	ribosome production factor 1
zma-u.5	100273986	uncharacterized LOC100273986
osa-u.5	4340048	uncharacterized LOC4340048
tae-r.2	123166624	ribosome production factor 1
tae-r.2	123087878	ribosome production factor 1
tae-r.2	123150023	ribosome production factor 1
hvu-r.1	123408094	ribosome production factor 1-like
hvu-r.1	123411263	ribosome production factor 1-like
bdi-r.1	100833727	ribosome production factor 1
ath-u.5	MEE49	Ribosomal RNA processing Brix domain protein
gma-u.5	100791194	ribosome production factor 1
gma-u.5	100785331	Brix domain-containing protein
sly-u.5	101259402	uncharacterized LOC101259402
bra-r.6	103836813	ribosome production factor 1
vvi-u.5	100263155	uncharacterized LOC100263155
vvi-u.5	100266185	uncharacterized LOC100266185
ppo-u.5	7487755	uncharacterized LOC7487755
ppo-u.5	7455374	uncharacterized LOC7455374
mtr-u.5	25500582	ribosome production factor 1
ghi-r.1	107954412	ribosome production factor 1
ghi-r.1	107937025	ribosome production factor 1
bna-r.1	106426594	ribosome production factor 1
bna-r.1	125577654	ribosome production factor 1-like
sot-r.1	102599817	ribosome production factor 1-like
cit-r.1	102608771	uncharacterized LOC102608771
nta-r.1	107817240	uncharacterized LOC107817240
nta-r.1	107780918	uncharacterized LOC107780918
cre-r.1	CHLRE_04g218850v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000470 [list] [network] maturation of LSU-rRNA	(29 genes)	IEA
GO:0000460 [list] [network] maturation of 5.8S rRNA	(37 genes)	IEA

GO CC

GO:0030687 [list] [network] preribosome, large subunit precursor	(25 genes)	IEA
GO:0005730 [list] [network] nucleolus	(194 genes)	IEA

GO MF

GO:0042134 [list] [network] rRNA primary transcript binding

(3 genes)

IEA

Protein

XP_002437785.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 2, pero 1, cyto_plas 1

(predict for XP_002437785.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002437785.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8068415	zma-u.5 for 100273986	osa-u.5 for 4340048	tae-r.2 for 123166624	tae-r.2 for 123087878	tae-r.2 for 123150023	hvu-r.1 for 123408094	hvu-r.1 for 123411263	bdi-r.1 for 100833727	ath-u.5 for MEE49	gma-u.5 for 100791194	gma-u.5 for 100785331	sly-u.5 for 101259402	bra-r.6 for 103836813	vvi-u.5 for 100263155	vvi-u.5 for 100266185	ppo-u.5 for 7487755	ppo-u.5 for 7455374	mtr-u.5 for 25500582	ghi-r.1 for 107954412	ghi-r.1 for 107937025	bna-r.1 for 106426594	bna-r.1 for 125577654	sot-r.1 for 102599817	cit-r.1 for 102608771	nta-r.1 for 107817240	nta-r.1 for 107780918	cre-r.1 for CHLRE_04g218850v5

Ortholog

Ortholog ID: 8551

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

MEE49

Function^*

ribosome production factor 1

uncharacterized LOC100273986

uncharacterized LOC4340048

ribosome production factor 1

ribosome production factor 1-like

ribosome production factor 1

Ribosomal RNA processing Brix domain protein

ribosome production factor 1

Brix domain-containing protein

uncharacterized LOC101259402

ribosome production factor 1

uncharacterized LOC100263155

uncharacterized LOC100266185

uncharacterized LOC7487755

uncharacterized LOC7455374

ribosome production factor 1

ribosome production factor 1-like

uncharacterized LOC102608771

uncharacterized LOC107817240

uncharacterized LOC107780918

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2
tae03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03010	Ribosome	2
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr03040	Spliceosome	3
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	4
cre03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

8068415

100273986

4340048

123166624

123087878

123150023

123408094

123411263

100833727

828136

100791194

100785331

101259402

103836813

100263155

100266185

7487755

7455374

25500582

107954412

107937025

106426594

125577654

102599817

102608771

107817240

107780918

5717842

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8068415 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8068415 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	2	1	1	2	1	1	2	2	1	2	2	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8068415 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8068415 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**