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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PIL5   phytochrome interacting factor 3-like 5 
 ath-u.5   PIL5   phytochrome interacting factor 3-like 5 
 ath-r.7   PIL5   phytochrome interacting factor 3-like 5 
 ath-e.2   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.bio   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.hor   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.lig   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.str   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.tis   PIL5   phytochrome interacting factor 3-like 5 
 bra-r.6   117126501   transcription factor PIF1 
 bna-r.1   106357954   transcription factor PIF1 
 ghi-r.1   121219564   transcription factor PIF1 
 ghi-r.1   107954644   transcription factor PIF1 
 ghi-r.1   107925868   transcription factor PIF1 
 cit-r.1   102621687   transcription factor PIF1 
 gma-u.5   100788491   transcription factor PIF1 
 gma-u.5   100792121   transcription factor PIF1 
 vvi-u.5   100264869   transcription factor PIF1 
 ppo-u.5   7459525   transcription factor PIF1 
 mtr-u.5   25484155   transcription factor PIF1 
 mtr-u.5   11419484   transcription factor PIF1 
 sly-u.5   101264668   transcription factor PIF1 
 sly-u.5   101260141   transcription factor PIF1 
 sot-r.1   102585610   transcription factor PIF1-like 
 sot-r.1   102583507   transcription factor PIF1-like 
 nta-r.1   107828013   transcription factor PIF1 
 nta-r.1   107808530   transcription factor PIF1-like 
 nta-r.1   107773950   transcription factor PIF1-like 

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Top 50 coexpressed genes to PIL5 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PIL5 (ath-m.9 coexpression data)

CoexMap"816538"


athPIL5 | Entrez gene ID : 816538      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 9 1 1 3 1 2 1 1 2 2 2 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0006783 [list] [network] heme biosynthetic process  (8 genes)  IMP  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IDA  
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (16 genes)  IMP  
GO:0009686 [list] [network] gibberellin biosynthetic process  (20 genes)  IMP  
GO:0009959 [list] [network] negative gravitropism  (25 genes)  IMP TAS  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (27 genes)  IMP  
GO:0010187 [list] [network] negative regulation of seed germination  (29 genes)  IGI IMP  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (41 genes)  IMP  
GO:0010099 [list] [network] regulation of photomorphogenesis  (41 genes)  TAS  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  TAS  
GO:0009408 [list] [network] response to heat  (271 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0010313 [list] [network] phytochrome binding  (4 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA IEA ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189559.1 [sequence] [blastp]
NP_001318252.1 [sequence] [blastp]
NP_001323901.1 [sequence] [blastp]
NP_001323902.1 [sequence] [blastp]
NP_001323903.1 [sequence] [blastp]
NP_001323904.1 [sequence] [blastp]
NP_001323905.1 [sequence] [blastp]
NP_849996.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001189559.1)
nucl 10  (predict for NP_001318252.1)
nucl 10  (predict for NP_001323901.1)
nucl 10  (predict for NP_001323902.1)
nucl 10  (predict for NP_001323903.1)
nucl 10  (predict for NP_001323904.1)
nucl 10  (predict for NP_001323905.1)
nucl 10  (predict for NP_849996.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001189559.1)
other 9  (predict for NP_001318252.1)
other 9  (predict for NP_001323901.1)
other 9  (predict for NP_001323902.1)
other 9  (predict for NP_001323903.1)
other 9  (predict for NP_001323904.1)
other 9  (predict for NP_001323905.1)
other 9  (predict for NP_849996.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PIL5
ath-u.5
for
PIL5
ath-r.7
for
PIL5
ath-e.2
for
PIL5
ath-m.4.bio
for
PIL5
ath-m.4.hor
for
PIL5
ath-m.4.lig
for
PIL5
ath-m.4.str
for
PIL5
ath-m.4.tis
for
PIL5
bra-r.6
for
117126501
bna-r.1
for
106357954
ghi-r.1
for
121219564
ghi-r.1
for
107954644
ghi-r.1
for
107925868
cit-r.1
for
102621687
gma-u.5
for
100788491
gma-u.5
for
100792121
vvi-u.5
for
100264869
ppo-u.5
for
7459525
mtr-u.5
for
25484155
mtr-u.5
for
11419484
sly-u.5
for
101264668
sly-u.5
for
101260141
sot-r.1
for
102585610
sot-r.1
for
102583507
nta-r.1
for
107828013
nta-r.1
for
107808530
nta-r.1
for
107773950


Ortholog ID: 8878
Species ath bra bna ghi ghi ghi cit gma gma gma vvi ppo mtr mtr sly sly sot sot nta nta nta
Symbol PIL5 LOC117126501 LOC106357954 LOC107925868 LOC107924656 LOC107924576 LOC102621687 LOC100788491 LOC100792121 LOC100797225 LOC100264869 LOC7459525 LOC25484155 LOC11419484 LOC101264668 LOC101260141 LOC102585610 LOC102583507 LOC107828013 LOC107808530 LOC142171506
Function* phytochrome interacting factor 3-like 5 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1-like transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 5
gma00500 Starch and sucrose metabolism 3
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 9
sot04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 5
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816538 117126501 106357954 107925868 107924656 107924576 102621687 100788491 100792121 100797225 100264869 7459525 25484155 11419484 101264668 101260141 102585610 102583507 107828013 107808530 142171506
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