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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   GRF3   growth-regulating factor 3 
 ath-u.5   GRF3   growth-regulating factor 3 
 ath-r.7   GRF3   growth-regulating factor 3 
 ath-e.2   GRF3   growth-regulating factor 3 
 ath-m.4.bio   GRF3   growth-regulating factor 3 
 ath-m.4.hor   GRF3   growth-regulating factor 3 
 ath-m.4.lig   GRF3   growth-regulating factor 3 
 ath-m.4.str   GRF3   growth-regulating factor 3 
 ath-m.4.tis   GRF3   growth-regulating factor 3 
 ath-u.5   GRF4   growth-regulating factor 4 
 bra-r.6   103865541   growth-regulating factor 3 
 bra-r.6   103867286   growth-regulating factor 3 
 bna-r.1   125609293   growth-regulating factor 3-like 
 bna-r.1   125608315   growth-regulating factor 3-like 
 ghi-r.1   107948453   growth-regulating factor 3 
 ghi-r.1   107908708   growth-regulating factor 3 
 ghi-r.1   107889558   growth-regulating factor 3 
 cit-r.1   102615240   growth-regulating factor 3 
 gma-u.5   GRF12   growth-regulating factor 
 gma-u.5   GRF3   growth-regulating factor 3 
 gma-u.5   GRF20   growth-regulating factor 
 vvi-u.5   100249368   growth-regulating factor 3 
 ppo-u.5   18100062   growth-regulating factor 4 
 mtr-u.5   11429911   growth-regulating factor 3 
 sly-u.5   101261864   growth-regulating factor 3 
 sly-u.5   101268132   growth-regulating factor 3-like 
 sot-r.1   107059479   growth-regulating factor 3-like 
 sot-r.1   102596708   growth-regulating factor 3-like 
 sot-r.1   102584006   growth-regulating factor 3-like 
 nta-r.1   107813130   growth-regulating factor 3 
 nta-r.1   107799814   growth-regulating factor 3-like 

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Top 50 coexpressed genes to GRF3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GRF3 (ath-m.9 coexpression data)

CoexMap"818213"


athGRF3 | Entrez gene ID : 818213      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa hvu tae cre zma bdi sbi
Paralog 10 2 2 3 1 3 1 1 1 2 3 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0061062 [list] [network] regulation of nematode larval development  (5 genes)  IMP  
GO:0008285 [list] [network] negative regulation of cell population proliferation  (42 genes)  IMP  
GO:0009624 [list] [network] response to nematode  (90 genes)  IEP  
GO:0009739 [list] [network] response to gibberellin  (125 genes)  IEP  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IEA  
GO:0048366 [list] [network] leaf development  (371 genes)  IGI  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM ISS  
GO MF
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_181181.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_181181.1)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for NP_181181.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
GRF3
ath-u.5
for
GRF3
ath-r.7
for
GRF3
ath-e.2
for
GRF3
ath-m.4.bio
for
GRF3
ath-m.4.hor
for
GRF3
ath-m.4.lig
for
GRF3
ath-m.4.str
for
GRF3
ath-m.4.tis
for
GRF3
ath-u.5
for
GRF4
bra-r.6
for
103865541
bra-r.6
for
103867286
bna-r.1
for
125609293
bna-r.1
for
125608315
ghi-r.1
for
107948453
ghi-r.1
for
107908708
ghi-r.1
for
107889558
cit-r.1
for
102615240
gma-u.5
for
GRF12
gma-u.5
for
GRF3
gma-u.5
for
GRF20
vvi-u.5
for
100249368
ppo-u.5
for
18100062
mtr-u.5
for
11429911
sly-u.5
for
101261864
sly-u.5
for
101268132
sot-r.1
for
107059479
sot-r.1
for
102596708
sot-r.1
for
102584006
nta-r.1
for
107813130
nta-r.1
for
107799814


Ortholog ID: 4531
Species ath ath bra bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr sly sly sot sot sot nta nta nta
Symbol GRF3 GRF4 LOC103867286 LOC125609293 LOC106367805 LOC107908708 LOC107889558 LOC107948122 LOC102615240 GRF12 GRF3 GRF9 LOC100249368 LOC18100062 LOC11429911 LOC101261864 LOC101268132 LOC107059479 LOC102596708 LOC102584006 LOC107813130 LOC107799814 LOC107770693
Function* growth-regulating factor 3 growth-regulating factor 4 growth-regulating factor 3 growth-regulating factor 3-like growth-regulating factor 4 growth-regulating factor 3 growth-regulating factor 3 growth-regulating factor 3-like growth-regulating factor 3 growth-regulating factor growth-regulating factor 3 growth-regulating factor growth-regulating factor 3 growth-regulating factor 4 growth-regulating factor 3 growth-regulating factor 3 growth-regulating factor 3-like growth-regulating factor 3-like growth-regulating factor 3-like growth-regulating factor 3-like growth-regulating factor 3 growth-regulating factor 3-like growth-regulating factor 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 12
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818213 824457 103867286 125609293 106367805 107908708 107889558 107948122 102615240 100817197 100816436 100814300 100249368 18100062 11429911 101261864 101268132 107059479 102596708 102584006 107813130 107799814 107770693
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