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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   FHY3   far-red elongated hypocotyls 3 
 ath-u.5   FHY3   far-red elongated hypocotyls 3 
 ath-r.7   FHY3   far-red elongated hypocotyls 3 
 ath-e.2   FHY3   far-red elongated hypocotyls 3 
 ath-m.4.bio   FHY3   far-red elongated hypocotyls 3 
 ath-m.4.hor   FHY3   far-red elongated hypocotyls 3 
 ath-m.4.lig   FHY3   far-red elongated hypocotyls 3 
 ath-m.4.str   FHY3   far-red elongated hypocotyls 3 
 ath-m.4.tis   FHY3   far-red elongated hypocotyls 3 
 bra-r.6   103869116   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bra-r.6   103834833   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106439811   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106396279   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106394085   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ghi-r.1   107908430   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ghi-r.1   107887164   protein FAR-RED ELONGATED HYPOCOTYL 3 
 cit-r.1   102625739   protein FAR-RED ELONGATED HYPOCOTYL 3 
 gma-u.5   100810223   protein FAR-RED ELONGATED HYPOCOTYL 3-like 
 gma-u.5   100817034   protein FAR-RED ELONGATED HYPOCOTYL 3 
 vvi-u.5   100258744   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7453722   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 mtr-u.5   112420345   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sly-u.5   101256896   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sot-r.1   102598983   protein FAR-RED ELONGATED HYPOCOTYL 3 
 nta-r.1   107774463   protein FAR-RED ELONGATED HYPOCOTYL 3 
 nta-r.1   107802931   protein FAR-RED ELONGATED HYPOCOTYL 3 

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Top 50 coexpressed genes to FHY3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FHY3 (ath-m.9 coexpression data)

CoexMap"821781"


athFHY3 | Entrez gene ID : 821781      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi osa tae hvu zma cre bdi
Paralog 9 2 3 2 1 2 1 2 1 1 1 2 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042753 [list] [network] positive regulation of circadian rhythm  (12 genes)  IEP IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:1900056 [list] [network] negative regulation of leaf senescence  (22 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific  (9 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001118673.1 [sequence] [blastp]
NP_188856.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001118673.1)
nucl 10  (predict for NP_188856.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001118673.1)
other 9  (predict for NP_188856.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
FHY3
ath-u.5
for
FHY3
ath-r.7
for
FHY3
ath-e.2
for
FHY3
ath-m.4.bio
for
FHY3
ath-m.4.hor
for
FHY3
ath-m.4.lig
for
FHY3
ath-m.4.str
for
FHY3
ath-m.4.tis
for
FHY3
bra-r.6
for
103869116
bra-r.6
for
103834833
bna-r.1
for
106439811
bna-r.1
for
106396279
bna-r.1
for
106394085
ghi-r.1
for
107908430
ghi-r.1
for
107887164
cit-r.1
for
102625739
gma-u.5
for
100810223
gma-u.5
for
100817034
vvi-u.5
for
100258744
ppo-u.5
for
7453722
ppo-u.5
for
7479602
mtr-u.5
for
112420345
sly-u.5
for
101256896
sot-r.1
for
102598983
nta-r.1
for
107774463
nta-r.1
for
107802931


Ortholog ID: 11962
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta
Symbol FHY3 LOC103869116 LOC103834833 LOC106396279 LOC106345472 LOC125606721 LOC107908430 LOC107887164 LOC102625739 LOC100810223 LOC100817034 LOC100258744 LOC7453722 LOC7479602 LOC112420345 LOC101256896 LOC102598983 LOC107774463 LOC107802931
Function* far-red elongated hypocotyls 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra03250 Viral life cycle - HIV-1 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
bna04120 Ubiquitin mediated proteolysis 3
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821781 103869116 103834833 106396279 106345472 125606721 107908430 107887164 102625739 100810223 100817034 100258744 7453722 7479602 112420345 101256896 102598983 107774463 107802931
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