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Orthologous genes in OrthoFinder**

Species Gene Description
 cit-r.1   102625739   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ath-u.5   FHY3   far-red elongated hypocotyls 3 
 bra-r.6   103834833   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bra-r.6   103869116   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ghi-r.1   107908430   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ghi-r.1   107887164   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106439811   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106396279   protein FAR-RED ELONGATED HYPOCOTYL 3 
 bna-r.1   106394085   protein FAR-RED ELONGATED HYPOCOTYL 3 
 gma-u.5   100817034   protein FAR-RED ELONGATED HYPOCOTYL 3 
 gma-u.5   100810223   protein FAR-RED ELONGATED HYPOCOTYL 3-like 
 vvi-u.5   100258744   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7453722   protein FAR-RED ELONGATED HYPOCOTYL 3 
 mtr-u.5   112420345   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sly-u.5   101256896   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sot-r.1   102598983   protein FAR-RED ELONGATED HYPOCOTYL 3 
 nta-r.1   107774463   protein FAR-RED ELONGATED HYPOCOTYL 3 
 nta-r.1   107802931   protein FAR-RED ELONGATED HYPOCOTYL 3 

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Top 50 coexpressed genes to 102625739 (cit-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 102625739 (cit-r.1 coexpression data)

CoexMap"102625739"


citLOC102625739 | Entrez gene ID : 102625739    
Species cit ath bra ghi bna gma vvi ppo mtr sly sot nta bdi osa tae zma cre sbi hvu
Paralog 1 1 2 2 3 2 1 2 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1325 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (771 genes)  IEA  
Protein XP_006481370.1 [sequence] [blastp]
XP_006481371.1 [sequence] [blastp]
XP_024955385.1 [sequence] [blastp]
XP_024955386.1 [sequence] [blastp]
XP_052299072.1 [sequence] [blastp]
XP_052299073.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_006481370.1)
nucl 10  (predict for XP_006481371.1)
nucl 10  (predict for XP_024955385.1)
nucl 10  (predict for XP_024955386.1)
nucl 10  (predict for XP_052299072.1)
nucl 10  (predict for XP_052299073.1)
Subcellular
localization
TargetP
other 9  (predict for XP_006481370.1)
other 9  (predict for XP_006481371.1)
other 9  (predict for XP_024955385.1)
other 9  (predict for XP_024955386.1)
other 9  (predict for XP_052299072.1)
other 9  (predict for XP_052299073.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cit-r.1
for
102625739
ath-u.5
for
FHY3
bra-r.6
for
103834833
bra-r.6
for
103869116
ghi-r.1
for
107908430
ghi-r.1
for
107887164
bna-r.1
for
106439811
bna-r.1
for
106396279
bna-r.1
for
106394085
gma-u.5
for
100817034
gma-u.5
for
100810223
vvi-u.5
for
100258744
ppo-u.5
for
7479602
ppo-u.5
for
7453722
mtr-u.5
for
112420345
sly-u.5
for
101256896
sot-r.1
for
102598983
nta-r.1
for
107774463
nta-r.1
for
107802931


Ortholog ID: 11962
Species cit ath bra bra ghi ghi bna bna bna gma gma vvi ppo ppo mtr sly sot nta nta
Symbol LOC102625739 FHY3 LOC103834833 LOC103869116 LOC107908430 LOC107887164 LOC106396279 LOC106345472 LOC125606721 LOC100817034 LOC100810223 LOC100258744 LOC7479602 LOC7453722 LOC112420345 LOC101256896 LOC102598983 LOC107774463 LOC107802931
Function* protein FAR-RED ELONGATED HYPOCOTYL 3 far-red elongated hypocotyls 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra03250 Viral life cycle - HIV-1 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
bna04120 Ubiquitin mediated proteolysis 3
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 102625739 821781 103834833 103869116 107908430 107887164 106396279 106345472 125606721 100817034 100810223 100258744 7479602 7453722 112420345 101256896 102598983 107774463 107802931
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