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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-r.4   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-m.4   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7453722   protein FAR-RED ELONGATED HYPOCOTYL 3 
 gma-u.5   100810223   protein FAR-RED ELONGATED HYPOCOTYL 3-like 
 gma-u.5   100817034   protein FAR-RED ELONGATED HYPOCOTYL 3 
 mtr-u.5   112420345   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ath-u.5   FHY3   far-red elongated hypocotyls 3 
 vvi-u.5   100258744   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sly-u.5   101256896   protein FAR-RED ELONGATED HYPOCOTYL 3 

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Top 50 coexpressed genes to 7479602 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7479602 (ppo-u.5 coexpression data)

CoexMap"7479602"


ppoLOC7479602 | Entrez gene ID : 7479602    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 4 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_024459456.1 [sequence] [blastp]
XP_024459457.1 [sequence] [blastp]
XP_024459458.1 [sequence] [blastp]
XP_024459459.1 [sequence] [blastp]
XP_024459461.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_024459456.1)
nucl 9  (predict for XP_024459457.1)
nucl 9  (predict for XP_024459458.1)
nucl 9  (predict for XP_024459459.1)
nucl 9  (predict for XP_024459461.1)
Subcellular
localization
TargetP
other 9  (predict for XP_024459456.1)
other 9  (predict for XP_024459457.1)
other 9  (predict for XP_024459458.1)
other 9  (predict for XP_024459459.1)
other 9  (predict for XP_024459461.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7479602

.
ppo-r.4
for
7479602

.
ppo-m.4
for
7479602

.
ppo-u.5
for
7453722

.
gma-u.5
for
100810223

.
gma-u.5
for
100817034

.
mtr-u.5
for
112420345

.
ath-u.5
for
FHY3

.
vvi-u.5
for
100258744

.
sly-u.5
for
101256896

.


Ortholog ID: 11962
Species ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot cit nta nta
Symbol FHY3 LOC100817034 LOC100810223 LOC101256896 LOC103869116 LOC103834833 LOC100258744 LOC7453722 LOC7479602 LOC112420345 LOC107887164 LOC107908430 LOC106345472 LOC125606721 LOC102598983 LOC102625739 LOC107802931 LOC107774463
Function* far-red elongated hypocotyls 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra03250 Viral life cycle - HIV-1 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
bna04120 Ubiquitin mediated proteolysis 3
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821781 100817034 100810223 101256896 103869116 103834833 100258744 7453722 7479602 112420345 107887164 107908430 106345472 125606721 102598983 102625739 107802931 107774463
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