Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107887164   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ath-u.5   FHY3   far-red elongated hypocotyls 3 
 gma-u.5   100810223   protein FAR-RED ELONGATED HYPOCOTYL 3-like 
 gma-u.5   100817034   protein FAR-RED ELONGATED HYPOCOTYL 3 
 vvi-u.5   100258744   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7479602   protein FAR-RED ELONGATED HYPOCOTYL 3 
 ppo-u.5   7453722   protein FAR-RED ELONGATED HYPOCOTYL 3 
 mtr-u.5   112420345   protein FAR-RED ELONGATED HYPOCOTYL 3 
 sly-u.5   101256896   protein FAR-RED ELONGATED HYPOCOTYL 3 

close


Top 50 coexpressed genes to 107887164 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 107887164 (ghi-r.1 coexpression data)

CoexMap"107887164"


ghiLOC107887164 | Entrez gene ID : 107887164    
Species ghi ath gma vvi ppo mtr sly hvu zma bna cit bra osa sbi bdi nta tae cre sot
Paralog 1 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (4318 genes)  IEA  
GO CC
GO MF
GO:0008270 [list] [network] zinc ion binding  (1753 genes)  IEA  
Protein XP_016666811.1 [sequence] [blastp]
XP_040952377.1 [sequence] [blastp]
XP_040952379.1 [sequence] [blastp]
XP_040952382.1 [sequence] [blastp]
XP_040952390.1 [sequence] [blastp]
XP_040952393.1 [sequence] [blastp]
XP_040952395.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_016666811.1)
nucl 9  (predict for XP_040952377.1)
nucl 9  (predict for XP_040952379.1)
nucl 9  (predict for XP_040952382.1)
nucl 9  (predict for XP_040952390.1)
nucl 9  (predict for XP_040952393.1)
nucl 9  (predict for XP_040952395.1)
Subcellular
localization
TargetP
other 9  (predict for XP_016666811.1)
other 9  (predict for XP_040952377.1)
other 9  (predict for XP_040952379.1)
other 9  (predict for XP_040952382.1)
other 9  (predict for XP_040952390.1)
other 9  (predict for XP_040952393.1)
other 9  (predict for XP_040952395.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107887164
ath-u.5
for
FHY3
gma-u.5
for
100810223
gma-u.5
for
100817034
vvi-u.5
for
100258744
ppo-u.5
for
7479602
ppo-u.5
for
7453722
mtr-u.5
for
112420345
sly-u.5
for
101256896


Ortholog ID: 11962
Species ghi ghi ath bra bra bna bna cit gma gma vvi ppo ppo mtr sly sot nta nta
Symbol LOC107887164 LOC107908430 FHY3 LOC103869116 LOC103834833 LOC106345472 LOC125606721 LOC102625739 LOC100817034 LOC100810223 LOC100258744 LOC7453722 LOC7479602 LOC112420345 LOC101256896 LOC102598983 LOC107802931 LOC107774463
Function* protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 far-red elongated hypocotyls 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3-like protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3 protein FAR-RED ELONGATED HYPOCOTYL 3
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra03250 Viral life cycle - HIV-1 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 3
bna04120 Ubiquitin mediated proteolysis 3
bna04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03083 Polycomb repressive complex 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107887164 107908430 821781 103869116 103834833 106345472 125606721 102625739 100817034 100810223 100258744 7453722 7479602 112420345 101256896 102598983 107802931 107774463
The preparation time of this page was 0.1 [sec].