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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AFB2   auxin signaling F-box 2 
 ath-u.5   AFB2   auxin signaling F-box 2 
 ath-r.7   AFB2   auxin signaling F-box 2 
 ath-e.2   AFB2   auxin signaling F-box 2 
 ath-m.4.bio   AFB2   auxin signaling F-box 2 
 ath-m.4.hor   AFB2   auxin signaling F-box 2 
 ath-m.4.lig   AFB2   auxin signaling F-box 2 
 ath-m.4.str   AFB2   auxin signaling F-box 2 
 ath-m.4.tis   AFB2   auxin signaling F-box 2 
 ath-u.5   AFB3   auxin signaling F-box 3 
 bra-r.6   103854290   protein AUXIN SIGNALING F-BOX 2 
 bra-r.6   103843104   protein AUXIN SIGNALING F-BOX 3 
 bra-r.6   103836140   protein AUXIN SIGNALING F-BOX 3 
 bna-r.1   106382373   protein AUXIN SIGNALING F-BOX 3 
 bna-r.1   106402220   protein AUXIN SIGNALING F-BOX 2 
 bna-r.1   106401406   protein AUXIN SIGNALING F-BOX 3 
 ghi-r.1   107923921   protein AUXIN SIGNALING F-BOX 2 
 ghi-r.1   107937113   protein AUXIN SIGNALING F-BOX 2 
 ghi-r.1   107935837   protein AUXIN SIGNALING F-BOX 2 
 cit-r.1   102616638   protein AUXIN SIGNALING F-BOX 2 
 gma-u.5   AFB3A   auxin signaling F-box 3 protein 
 gma-u.5   100802672   protein AUXIN SIGNALING F-BOX 2 
 gma-u.5   AFB3B   auxin signaling F-box 3 protein 
 vvi-u.5   100263524   protein AUXIN SIGNALING F-BOX 2 
 ppo-u.5   18107123   protein AUXIN SIGNALING F-BOX 2 
 ppo-u.5   7495822   protein AUXIN SIGNALING F-BOX 2 
 mtr-u.5   11429111   protein AUXIN SIGNALING F-BOX 2 
 nta-r.1   107789933   protein AUXIN SIGNALING F-BOX 2 
 nta-r.1   107781894   protein AUXIN SIGNALING F-BOX 2 
 osa-u.5   4350590   transport inhibitor response 1-like protein Os11g0515500 
 osa-u.5   4335696   transport inhibitor response 1-like protein Os04g0395600 
 zma-u.5   100278846   Protein AUXIN SIGNALING F-BOX 3 
 zma-u.5   100281739   transport inhibitor response 1 protein 
 zma-u.5   100216731   Protein AUXIN SIGNALING F-BOX 3 
 tae-r.2   123045326   transport inhibitor response 1-like protein Os04g0395600 
 tae-r.2   123053161   transport inhibitor response 1-like protein Os04g0395600 
 tae-r.2   123189076   transport inhibitor response 1-like protein Os04g0395600 
 hvu-r.1   123399694   transport inhibitor response 1-like protein Os11g0515500 
 hvu-r.1   123426568   transport inhibitor response 1-like protein Os04g0395600 
 sbi-r.1   8083114   transport inhibitor response 1-like protein Os11g0515500 
 sbi-r.1   8072008   transport inhibitor response 1-like protein Os04g0395600 
 bdi-r.1   100822494   transport inhibitor response 1-like protein Os04g0395600 
 bdi-r.1   100839342   transport inhibitor response 1-like protein Os11g0515500 

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Top 50 coexpressed genes to AFB2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AFB2 (ath-m.9 coexpression data)

CoexMap"822296"


athAFB2 | Entrez gene ID : 822296      
Species ath bra bna ghi cit gma vvi ppo mtr nta osa zma tae hvu sbi bdi sot cre sly
Paralog 10 3 3 3 1 3 1 2 1 2 2 3 3 2 2 2 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0010152 [list] [network] pollen maturation  (19 genes)  IGI  
GO:0009734 [list] [network] auxin-activated signaling pathway  (65 genes)  IMP ISS  
GO:0048443 [list] [network] stamen development  (113 genes)  IGI  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (41 genes)  ISS  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0000822 [list] [network] inositol hexakisphosphate binding  (7 genes)  ISS  
GO:0010011 [list] [network] auxin binding  (10 genes)  IGI ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566800.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_566800.1)
Subcellular
localization
TargetP
other 9  (predict for NP_566800.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AFB2
ath-u.5
for
AFB2
ath-r.7
for
AFB2
ath-e.2
for
AFB2
ath-m.4.bio
for
AFB2
ath-m.4.hor
for
AFB2
ath-m.4.lig
for
AFB2
ath-m.4.str
for
AFB2
ath-m.4.tis
for
AFB2
ath-u.5
for
AFB3
bra-r.6
for
103854290
bra-r.6
for
103843104
bra-r.6
for
103836140
bna-r.1
for
106382373
bna-r.1
for
106402220
bna-r.1
for
106401406
ghi-r.1
for
107923921
ghi-r.1
for
107937113
ghi-r.1
for
107935837
cit-r.1
for
102616638
gma-u.5
for
AFB3A
gma-u.5
for
100802672
gma-u.5
for
AFB3B
vvi-u.5
for
100263524
ppo-u.5
for
18107123
ppo-u.5
for
7495822
mtr-u.5
for
11429111
nta-r.1
for
107789933
nta-r.1
for
107781894
osa-u.5
for
4350590
osa-u.5
for
4335696
zma-u.5
for
100278846
zma-u.5
for
100281739
zma-u.5
for
100216731
tae-r.2
for
123045326
tae-r.2
for
123053161
tae-r.2
for
123189076
hvu-r.1
for
123399694
hvu-r.1
for
123426568
sbi-r.1
for
8083114
sbi-r.1
for
8072008
bdi-r.1
for
100822494
bdi-r.1
for
100839342


Ortholog ID: 4247
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol AFB2 AFB3 LOC103854290 LOC103843104 LOC103836140 LOC106382373 LOC106405934 LOC106412544 LOC107937113 LOC107935837 LOC107911740 LOC102616638 AFB3A LOC100802672 LOC100788040 LOC100263524 LOC18107123 LOC7495822 LOC11429111 LOC107789933 LOC107781894 LOC4350590 LOC4335696 LOC100278846 LOC100281739 LOC100216731 LOC123189076 LOC123104279 LOC123112534 LOC123399694 LOC123426568 LOC8083114 LOC8072008 LOC100822494 LOC100839342
Function* auxin signaling F-box 2 auxin signaling F-box 3 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 3 protein AUXIN SIGNALING F-BOX 3 protein AUXIN SIGNALING F-BOX 3 protein AUXIN SIGNALING F-BOX 3-like protein AUXIN SIGNALING F-BOX 3 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 auxin signaling F-box 3 protein protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 protein AUXIN SIGNALING F-BOX 2 transport inhibitor response 1-like protein Os11g0515500 transport inhibitor response 1-like protein Os04g0395600 Protein AUXIN SIGNALING F-BOX 3 transport inhibitor response 1 protein Protein AUXIN SIGNALING F-BOX 3 transport inhibitor response 1-like protein Os04g0395600 transport inhibitor response 1-like protein Os11g0515500 transport inhibitor response 1-like protein Os11g0515500 transport inhibitor response 1-like protein Os11g0515500 transport inhibitor response 1-like protein Os04g0395600 transport inhibitor response 1-like protein Os11g0515500 transport inhibitor response 1-like protein Os04g0395600 transport inhibitor response 1-like protein Os04g0395600 transport inhibitor response 1-like protein Os11g0515500
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 4
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit03015 mRNA surveillance pathway 2
cit04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta01240 Biosynthesis of cofactors 3
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
nta01240 Biosynthesis of cofactors 3
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 3
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae00564 Glycerophospholipid metabolism 3
tae00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 2
sbi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822296 837838 103854290 103843104 103836140 106382373 106405934 106412544 107937113 107935837 107911740 102616638 100812516 100802672 100788040 100263524 18107123 7495822 11429111 107789933 107781894 4350590 4335696 100278846 100281739 100216731 123189076 123104279 123112534 123399694 123426568 8083114 8072008 100822494 100839342
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