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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   VFB2   VIER F-box protein 2 
 ath-u.5   VFB2   VIER F-box protein 2 
 ath-r.7   VFB2   VIER F-box protein 2 
 ath-e.2   VFB2   VIER F-box protein 2 
 ath-m.4.bio   VFB2   VIER F-box protein 2 
 ath-m.4.hor   VFB2   VIER F-box protein 2 
 ath-m.4.lig   VFB2   VIER F-box protein 2 
 ath-m.4.str   VFB2   VIER F-box protein 2 
 ath-m.4.tis   VFB2   VIER F-box protein 2 
 ath-u.5   VFB3   VIER F-box protein 3 
 ath-u.5   SKIP2   SKP1/ASK1-interacting protein 2 
 ath-u.5   VFB1   VIER F-box protein 1 
 bra-r.6   103868721   F-box protein At1g47056 
 bra-r.6   103829524   F-box protein SKIP2 
 bra-r.6   103837742   F-box protein SKIP2 
 bna-r.1   106360724   F-box protein SKIP2 
 bna-r.1   106366304   F-box protein SKIP2 
 bna-r.1   106366792   F-box protein SKIP2 
 ghi-r.1   121208280   F-box protein SKIP2 
 ghi-r.1   107918075   F-box protein At1g47056 
 ghi-r.1   107914326   F-box protein SKIP2 
 cit-r.1   102622449   F-box protein At1g47056 
 cit-r.1   102629556   F-box protein SKIP2 
 gma-u.5   100817022   F-box protein SKIP2 
 gma-u.5   100807711   F-box protein SKIP2 
 gma-u.5   100806231   F-box protein At1g47056 
 vvi-u.5   100250708   F-box protein At1g47056 
 vvi-u.5   100259063   F-box protein At1g47056 
 vvi-u.5   100852716   F-box protein SKIP2 
 ppo-u.5   18104843   F-box protein At1g47056 
 ppo-u.5   7472683   F-box protein At1g47056 
 ppo-u.5   7454906   F-box protein SKIP2 
 mtr-u.5   11420387   F-box protein At1g47056 
 mtr-u.5   112421285   F-box protein SKIP2 
 sly-u.5   101247773   F-box protein SKIP2 
 sly-u.5   101246998   F-box protein SKIP2-like 
 sly-u.5   101245757   F-box protein At1g47056 
 sot-r.1   102583494   F-box protein SKIP2-like 
 sot-r.1   102585400   F-box protein At1g47056-like 
 sot-r.1   102605238   F-box protein At1g47056-like 
 nta-r.1   142170645   F-box protein At1g47056-like 
 nta-r.1   107782164   F-box protein At1g47056 
 nta-r.1   107779658   F-box protein At1g47056-like 
 osa-u.5   4346401   F-box protein At1g47056 
 osa-u.5   4336338   F-box protein At1g47056 
 zma-u.5   103641829   F-box protein At1g47056-like 
 zma-u.5   103632351   F-box protein At1g47056 
 zma-u.5   100284044   uncharacterized LOC100284044 
 tae-r.2   123111486   F-box protein At1g47056 
 tae-r.2   123045968   F-box protein At1g47056 
 tae-r.2   123053845   F-box protein At1g47056 
 hvu-r.1   123452403   F-box protein At1g47056-like 
 hvu-r.1   123427190   F-box protein At1g47056-like 
 sbi-r.1   8063875   F-box protein At1g47056 
 sbi-r.1   110436572   F-box protein At1g47056-like 
 bdi-r.1   100846537   F-box protein At1g47056 
 bdi-r.1   100833356   F-box protein At1g47056 
 cre-r.1   CHLRE_01g047650v5   uncharacterized protein 

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Top 50 coexpressed genes to VFB2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VFB2 (ath-m.9 coexpression data)

CoexMap"824170"


athVFB2 | Entrez gene ID : 824170      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 3 3 2 3 3 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (219 genes)  TAS  
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  ISS  
Protein NP_566928.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  cyto_nucl 4,  chlo 2,  nucl 1  (predict for NP_566928.1)
Subcellular
localization
TargetP
other 8  (predict for NP_566928.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
VFB2
ath-u.5
for
VFB2
ath-r.7
for
VFB2
ath-e.2
for
VFB2
ath-m.4.bio
for
VFB2
ath-m.4.hor
for
VFB2
ath-m.4.lig
for
VFB2
ath-m.4.str
for
VFB2
ath-m.4.tis
for
VFB2
ath-u.5
for
VFB3
ath-u.5
for
SKIP2
ath-u.5
for
VFB1
bra-r.6
for
103868721
bra-r.6
for
103829524
bra-r.6
for
103837742
bna-r.1
for
106360724
bna-r.1
for
106366304
bna-r.1
for
106366792
ghi-r.1
for
121208280
ghi-r.1
for
107918075
ghi-r.1
for
107914326
cit-r.1
for
102622449
cit-r.1
for
102629556
gma-u.5
for
100817022
gma-u.5
for
100807711
gma-u.5
for
100806231
vvi-u.5
for
100250708
vvi-u.5
for
100259063
vvi-u.5
for
100852716
ppo-u.5
for
18104843
ppo-u.5
for
7472683
ppo-u.5
for
7454906
mtr-u.5
for
11420387
mtr-u.5
for
112421285
sly-u.5
for
101247773
sly-u.5
for
101246998
sly-u.5
for
101245757
sot-r.1
for
102583494
sot-r.1
for
102585400
sot-r.1
for
102605238
nta-r.1
for
142170645
nta-r.1
for
107782164
nta-r.1
for
107779658
osa-u.5
for
4346401
osa-u.5
for
4336338
zma-u.5
for
103641829
zma-u.5
for
103632351
zma-u.5
for
100284044
tae-r.2
for
123111486
tae-r.2
for
123045968
tae-r.2
for
123053845
hvu-r.1
for
123452403
hvu-r.1
for
123427190
sbi-r.1
for
8063875
sbi-r.1
for
110436572
bdi-r.1
for
100846537
bdi-r.1
for
100833356
cre-r.1
for
CHLRE_01g047650v5


Ortholog ID: 1465
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol VFB2 VFB3 VFB1 LOC103868721 LOC103829524 LOC103837742 LOC106405922 LOC106453799 LOC125586972 LOC107922226 LOC107931670 LOC107905601 LOC102622449 LOC102629556 LOC100807711 LOC100779319 LOC100250708 LOC100259063 LOC100852716 LOC18104843 LOC7472683 LOC7476400 LOC11420387 LOC112421285 LOC101247773 LOC101246998 LOC101245757 LOC102585400 LOC102605238 LOC107062868 LOC142170645 LOC107782164 LOC107779658 LOC4346401 LOC4336338 LOC103632351 LOC100284044 LOC100279556 LOC123053845 LOC123103293 LOC123120677 LOC123452403 LOC123427190 LOC8063875 LOC110436572 LOC100846537 LOC100833356 CHLRE_01g047650v5
Function* VIER F-box protein 2 VIER F-box protein 3 VIER F-box protein 1 F-box protein At1g47056 F-box protein SKIP2 F-box protein SKIP2 F-box/LRR-repeat protein 16 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein SKIP2 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein At1g47056 F-box protein SKIP2 F-box protein At1g47056 F-box protein SKIP2 F-box protein SKIP2 F-box protein SKIP2-like F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like putative F-box/LRR-repeat protein 8 F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 uncharacterized LOC100284044 uncharacterized LOC100279556 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056-like F-box protein At1g47056 F-box protein At1g47056 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 3
ghi04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03272 Virion - Hepatitis viruses 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
nta00051 Fructose and mannose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00053 Ascorbate and aldarate metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01240 Biosynthesis of cofactors 3
zma01250 Biosynthesis of nucleotide sugars 3
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
bdi00100 Steroid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824170 826171 841121 103868721 103829524 103837742 106405922 106453799 125586972 107922226 107931670 107905601 102622449 102629556 100807711 100779319 100250708 100259063 100852716 18104843 7472683 7476400 11420387 112421285 101247773 101246998 101245757 102585400 102605238 107062868 142170645 107782164 107779658 4346401 4336338 103632351 100284044 100279556 123053845 123103293 123120677 123452403 123427190 8063875 110436572 100846537 100833356 5715688
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