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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 bra-r.6   103863484   30S ribosomal protein 2, chloroplastic 
 bra-r.6   103848533   30S ribosomal protein 2, chloroplastic 
 bna-r.1   106390715   30S ribosomal protein 2, chloroplastic 
 ghi-r.1   107959531   30S ribosomal protein 2, chloroplastic 
 ghi-r.1   107914044   30S ribosomal protein 2, chloroplastic 
 cit-r.1   102608147   30S ribosomal protein 2, chloroplastic 
 gma-u.5   100811197   RNA recognition motif (RRM) domain-containing protein 
 gma-u.5   100783567   RNA recognition motif (RRM) domain-containing protein 
 vvi-u.5   100266645   small ribosomal subunit protein cS22 
 ppo-u.5   7454889   30S ribosomal protein 2, chloroplastic 
 mtr-u.5   11440749   30S ribosomal protein 2, chloroplastic 
 nta-r.1   107797860   small ribosomal subunit protein cS22 
 nta-r.1   107798186   small ribosomal subunit protein cS22 
 osa-u.5   4346605   30S ribosomal protein 2, chloroplastic 
 zma-u.5   100282980   uncharacterized LOC100282980 
 tae-r.2   123103412   30S ribosomal protein 2, chloroplastic 
 tae-r.2   123111608   30S ribosomal protein 2, chloroplastic 
 tae-r.2   123120979   30S ribosomal protein 2, chloroplastic 
 hvu-r.1   123397727   30S ribosomal protein 2, chloroplastic 
 sbi-r.1   8063470   30S ribosomal protein 2, chloroplastic 
 bdi-r.1   100825966   30S ribosomal protein 2, chloroplastic 

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Top 50 coexpressed genes to PSRP2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSRP2 (ath-m.9 coexpression data)

CoexMap"824379"


athPSRP2 | Entrez gene ID : 824379      
Species ath bra bna ghi cit gma vvi ppo mtr nta osa zma tae hvu sbi bdi sot cre sly
Paralog 9 2 1 2 1 2 1 1 1 2 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0080148 [list] [network] negative regulation of response to water deprivation  (5 genes)  IMP  
GO:1901001 [list] [network] negative regulation of response to salt stress  (14 genes)  IMP  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IMP  
GO:1900140 [list] [network] regulation of seedling development  (112 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
Protein NP_001030841.1 [sequence] [blastp]
NP_566958.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001030841.1)
chlo 9  (predict for NP_566958.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001030841.1)
chlo 8  (predict for NP_566958.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PSRP2
ath-u.5
for
PSRP2
ath-r.7
for
PSRP2
ath-e.2
for
PSRP2
ath-m.4.bio
for
PSRP2
ath-m.4.hor
for
PSRP2
ath-m.4.lig
for
PSRP2
ath-m.4.str
for
PSRP2
ath-m.4.tis
for
PSRP2
bra-r.6
for
103863484
bra-r.6
for
103848533
bna-r.1
for
106390715
ghi-r.1
for
107959531
ghi-r.1
for
107914044
cit-r.1
for
102608147
gma-u.5
for
100811197
gma-u.5
for
100783567
vvi-u.5
for
100266645
ppo-u.5
for
7454889
mtr-u.5
for
11440749
nta-r.1
for
107797860
nta-r.1
for
107798186
osa-u.5
for
4346605
zma-u.5
for
100282980
tae-r.2
for
123103412
tae-r.2
for
123111608
tae-r.2
for
123120979
hvu-r.1
for
123397727
sbi-r.1
for
8063470
bdi-r.1
for
100825966


Ortholog ID: 8978
Species ath bra bra bna ghi ghi cit gma gma vvi ppo mtr nta nta osa zma tae tae tae hvu sbi bdi
Symbol PSRP2 LOC103863484 LOC103848533 LOC106367844 LOC107959531 LOC107914044 LOC102608147 LOC100811197 LOC100783567 LOC100266645 LOC7454889 LOC11440749 LOC107797860 LOC107798186 LOC4346605 LOC100282980 LOC123103412 LOC123111608 LOC123120979 LOC123397727 LOC8063470 LOC100825966
Function* RNA-binding (RRM/RBD/RNP motifs) family protein 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic RNA recognition motif (RRM) domain-containing protein RNA recognition motif (RRM) domain-containing protein small ribosomal subunit protein cS22 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic small ribosomal subunit protein cS22 small ribosomal subunit protein cS22 30S ribosomal protein 2, chloroplastic uncharacterized LOC100282980 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 12
bna03015 mRNA surveillance pathway 3
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 5
ghi01240 Biosynthesis of cofactors 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma00860 Porphyrin metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae03010 Ribosome 5
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824379 103863484 103848533 106367844 107959531 107914044 102608147 100811197 100783567 100266645 7454889 11440749 107797860 107798186 4346605 100282980 123103412 123111608 123120979 123397727 8063470 100825966
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