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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   PSRP2   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100811197   RNA recognition motif (RRM) domain-containing protein 
 gma-u.5   100783567   RNA recognition motif (RRM) domain-containing protein 
 vvi-u.5   100266645   small ribosomal subunit protein cS22 
 ppo-u.5   7454889   30S ribosomal protein 2, chloroplastic 
 mtr-u.5   11440749   30S ribosomal protein 2, chloroplastic 
 osa-u.5   4346605   30S ribosomal protein 2, chloroplastic 
 zma-u.5   100282980   uncharacterized LOC100282980 

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Top 50 coexpressed genes to PSRP2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSRP2 (ath-u.5 coexpression data)

CoexMap"824379"


athPSRP2 | Entrez gene ID : 824379      
Species ath gma vvi ppo mtr osa zma tae hvu ghi bdi cit bra cre sbi bna sly nta sot
Paralog 9 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
ath03018 [list] [network] RNA degradation (114 genes)
GO BP
GO:0080148 [list] [network] negative regulation of response to water deprivation  (5 genes)  IMP  
GO:1901001 [list] [network] negative regulation of response to salt stress  (14 genes)  IMP  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IMP  
GO:1900140 [list] [network] regulation of seedling development  (112 genes)  IMP  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO MF
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
Protein NP_001030841.1 [sequence] [blastp]
NP_566958.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001030841.1)
chlo 9  (predict for NP_566958.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001030841.1)
chlo 8  (predict for NP_566958.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PSRP2

.
ath-r.7
for
PSRP2

.
ath-m.9
for
PSRP2

.
ath-e.2
for
PSRP2

.
ath-m.4.bio
for
PSRP2

.
ath-m.4.hor
for
PSRP2

.
ath-m.4.lig
for
PSRP2

.
ath-m.4.str
for
PSRP2

.
ath-m.4.tis
for
PSRP2

.
gma-u.5
for
100811197

.
gma-u.5
for
100783567

.
vvi-u.5
for
100266645

.
ppo-u.5
for
7454889

.
mtr-u.5
for
11440749

.
osa-u.5
for
4346605

.
zma-u.5
for
100282980

.


Ortholog ID: 8978
Species ath gma gma osa zma bra vvi ppo mtr tae tae hvu ghi ghi sbi cit bdi nta nta
Symbol PSRP2 LOC100811197 LOC100783567 LOC4346605 LOC100282980 LOC103848533 LOC100266645 LOC7454889 LOC11440749 LOC123120979 LOC123103412 LOC123397727 LOC107914044 LOC107959531 LOC8063470 LOC102608147 LOC100825966 LOC107797860 LOC107798186
Function* RNA-binding (RRM/RBD/RNP motifs) family protein RNA recognition motif (RRM) domain-containing protein RNA recognition motif (RRM) domain-containing protein 30S ribosomal protein 2, chloroplastic uncharacterized LOC100282980 30S ribosomal protein 2, chloroplastic small ribosomal subunit protein cS22 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic 30S ribosomal protein 2, chloroplastic small ribosomal subunit protein cS22 small ribosomal subunit protein cS22
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma00860 Porphyrin metabolism 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
bra00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 5
ghi01240 Biosynthesis of cofactors 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 7
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00750 Vitamin B6 metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824379 100811197 100783567 4346605 100282980 103848533 100266645 7454889 11440749 123120979 123103412 123397727 107914044 107959531 8063470 102608147 100825966 107797860 107798186
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