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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT3G56820   RmlC-type cupin 
 ath-u.5   AT3G56820   RmlC-type cupin 
 ath-r.7   AT3G56820   RmlC-type cupin 
 ath-e.2   AT3G56820   RmlC-type cupin 
 ath-m.4.bio   AT3G56820   RmlC-type cupin 
 ath-m.4.hor   AT3G56820   RmlC-type cupin 
 ath-m.4.lig   AT3G56820   RmlC-type cupin 
 ath-m.4.str   AT3G56820   RmlC-type cupin 
 ath-m.4.tis   AT3G56820   RmlC-type cupin 
 bra-r.6   103841578   uncharacterized LOC103841578 
 bna-r.1   BNAA09G36100D   uncharacterized BNAA09G36100D 
 bna-r.1   125578454   uncharacterized LOC125578454 
 ghi-r.1   107918378   uncharacterized LOC107918378 
 ghi-r.1   107894979   uncharacterized LOC107894979 
 cit-r.1   102609306   uncharacterized LOC102609306 
 gma-u.5   102659703   uncharacterized LOC102659703 
 gma-u.5   100782059   uncharacterized LOC100782059 
 vvi-u.5   100249949   uncharacterized LOC100249949 
 ppo-u.5   7495657   uncharacterized LOC7495657 
 mtr-u.5   11436537   uncharacterized LOC11436537 
 sly-u.5   101254251   uncharacterized LOC101254251 
 sot-r.1   102598362   uncharacterized LOC102598362 
 nta-r.1   107822904   uncharacterized LOC107822904 
 nta-r.1   107822614   uncharacterized LOC107822614 
 osa-u.5   4327350   uncharacterized LOC4327350 
 zma-u.5   100286137   uncharacterized LOC100286137 
 tae-r.2   123071134   uncharacterized LOC123071134 
 tae-r.2   123079498   uncharacterized LOC123079498 
 hvu-r.1   123444656   uncharacterized LOC123444656 
 sbi-r.1   8082419   uncharacterized LOC8082419 
 bdi-r.1   100824167   uncharacterized LOC100824167 

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Top 50 coexpressed genes to AT3G56820 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G56820 (ath-m.9 coexpression data)

CoexMap"824849"


athAT3G56820 | Entrez gene ID : 824849      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005797 [list] [network] Golgi medial cisterna  (58 genes)  HDA  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  HDA  
GO:0005768 [list] [network] endosome  (359 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001327890.1 [sequence] [blastp]
NP_001327891.1 [sequence] [blastp]
NP_567041.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo_mito 4,  chlo 1,  plas 1,  vacu 1,  golg 1,  golg_plas 1  (predict for NP_001327890.1)
mito 5,  chlo 3,  mito_plas 3  (predict for NP_001327891.1)
mito 5,  chlo_mito 4,  chlo 3  (predict for NP_567041.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001327890.1)
mito 8  (predict for NP_001327891.1)
mito 8  (predict for NP_567041.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT3G56820
ath-u.5
for
AT3G56820
ath-r.7
for
AT3G56820
ath-e.2
for
AT3G56820
ath-m.4.bio
for
AT3G56820
ath-m.4.hor
for
AT3G56820
ath-m.4.lig
for
AT3G56820
ath-m.4.str
for
AT3G56820
ath-m.4.tis
for
AT3G56820
bra-r.6
for
103841578
bna-r.1
for
BNAA09G36100D
bna-r.1
for
125578454
ghi-r.1
for
107918378
ghi-r.1
for
107894979
cit-r.1
for
102609306
gma-u.5
for
102659703
gma-u.5
for
100782059
vvi-u.5
for
100249949
ppo-u.5
for
7495657
mtr-u.5
for
11436537
sly-u.5
for
101254251
sot-r.1
for
102598362
nta-r.1
for
107822904
nta-r.1
for
107822614
osa-u.5
for
4327350
zma-u.5
for
100286137
tae-r.2
for
123071134
tae-r.2
for
123079498
hvu-r.1
for
123444656
sbi-r.1
for
8082419
bdi-r.1
for
100824167


Ortholog ID: 10156
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol AT3G56820 LOC103841578 BNAA09G36100D LOC125578454 LOC107918378 LOC107894979 LOC102609306 LOC102659703 LOC100782059 LOC100249949 LOC7495657 LOC11436537 LOC101254251 LOC102598362 LOC107822904 LOC107822614 LOC4327350 LOC100286137 LOC123071134 LOC123079498 LOC123444656 LOC8082419 LOC100824167
Function* RmlC-type cupin uncharacterized LOC103841578 uncharacterized BNAA09G36100D uncharacterized LOC125578454 uncharacterized LOC107918378 uncharacterized LOC107894979 uncharacterized LOC102609306 uncharacterized LOC102659703 uncharacterized LOC100782059 uncharacterized LOC100249949 uncharacterized LOC7495657 uncharacterized LOC11436537 uncharacterized LOC101254251 uncharacterized LOC102598362 uncharacterized LOC107822904 uncharacterized LOC107822614 uncharacterized LOC4327350 uncharacterized LOC100286137 uncharacterized LOC123071134 uncharacterized LOC123079498 uncharacterized LOC123444656 uncharacterized LOC8082419 uncharacterized LOC100824167
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 3
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 5
bna00513 Various types of N-glycan biosynthesis 5
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00510 N-Glycan biosynthesis 5
bna00513 Various types of N-glycan biosynthesis 5
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 2
bna03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi01200 Carbon metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 5
gma01200 Carbon metabolism 5
gma00010 Glycolysis / Gluconeogenesis 4
gma01230 Biosynthesis of amino acids 4
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 3
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
mtr00220 Arginine biosynthesis 2
mtr01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 5
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta00900 Terpenoid backbone biosynthesis 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta00900 Terpenoid backbone biosynthesis 2
nta00340 Histidine metabolism 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 8
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824849 103841578 106368056 125578454 107918378 107894979 102609306 102659703 100782059 100249949 7495657 11436537 101254251 102598362 107822904 107822614 4327350 100286137 123071134 123079498 123444656 8082419 100824167
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