ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G14610	DEAD box RNA helicase family protein
ath-u.5	AT5G14610	DEAD box RNA helicase family protein
ath-r.7	AT5G14610	DEAD box RNA helicase family protein
ath-e.2	AT5G14610	DEAD box RNA helicase family protein
ath-m.4.bio	AT5G14610	DEAD box RNA helicase family protein
ath-m.4.hor	AT5G14610	DEAD box RNA helicase family protein
ath-m.4.lig	AT5G14610	DEAD box RNA helicase family protein
ath-m.4.str	AT5G14610	DEAD box RNA helicase family protein
ath-m.4.tis	AT5G14610	DEAD box RNA helicase family protein
ath-u.5	AT3G06480	DEAD box RNA helicase family protein
ath-u.5	DRH1	DEAD box RNA helicase 1
bra-r.6	103859161	DEAD-box ATP-dependent RNA helicase 40
bra-r.6	103858908	DEAD-box ATP-dependent RNA helicase 14
bra-r.6	103850938	DEAD-box ATP-dependent RNA helicase 46
bna-r.1	106436521	DEAD-box ATP-dependent RNA helicase 14-like
bna-r.1	106388668	DEAD-box ATP-dependent RNA helicase 14
bna-r.1	106393650	DEAD-box ATP-dependent RNA helicase 14
ghi-r.1	121219595	DEAD-box ATP-dependent RNA helicase 46
ghi-r.1	107959861	DEAD-box ATP-dependent RNA helicase 46
ghi-r.1	107951608	DEAD-box ATP-dependent RNA helicase 46
cit-r.1	102623779	DEAD-box ATP-dependent RNA helicase 46
cit-r.1	102608201	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100807830	DEAD-box ATP-dependent RNA helicase 40
gma-u.5	100786511	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100806371	DEAD-box ATP-dependent RNA helicase 40
vvi-u.5	100264477	ATP-dependent RNA helicase-like protein DB10
vvi-u.5	100252874	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7468130	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7487865	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7461318	DEAD-box ATP-dependent RNA helicase 14-like
mtr-u.5	11430941	DEAD-box ATP-dependent RNA helicase 46
mtr-u.5	11420002	DEAD-box ATP-dependent RNA helicase 46
sly-u.5	101254752	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101248651	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101266555	DEAD-box ATP-dependent RNA helicase 40
sot-r.1	102597020	ATP-dependent RNA helicase-like protein DB10
sot-r.1	102584978	DEAD-box ATP-dependent RNA helicase 46-like
sot-r.1	102606394	ATP-dependent RNA helicase-like protein DB10
nta-r.1	107806607	ATP-dependent RNA helicase-like protein DB10
nta-r.1	107815007	DEAD-box ATP-dependent RNA helicase 40
nta-r.1	107823507	ATP-dependent RNA helicase-like protein DB10
osa-u.5	4351155	DEAD-box ATP-dependent RNA helicase 40
osa-u.5	4327645	DEAD-box ATP-dependent RNA helicase 14-like
osa-u.5	4326190	DEAD-box ATP-dependent RNA helicase 40-like
zma-u.5	100381784	putative DEAD-box ATP-dependent RNA helicase family protein
zma-u.5	100381583	DEAD-box ATP-dependent RNA helicase 40
zma-u.5	100383248	uncharacterized LOC100383248
tae-r.2	123069901	DEAD-box ATP-dependent RNA helicase 40
tae-r.2	123068848	DEAD-box ATP-dependent RNA helicase 40
tae-r.2	123069111	DEAD-box ATP-dependent RNA helicase 14
hvu-r.1	123443664	DEAD-box ATP-dependent RNA helicase 40-like
hvu-r.1	123443054	DEAD-box ATP-dependent RNA helicase 14
hvu-r.1	123442857	DEAD-box ATP-dependent RNA helicase 40-like
sbi-r.1	110435585	DEAD-box ATP-dependent RNA helicase 40-like
sbi-r.1	110433588	DEAD-box ATP-dependent RNA helicase 40-like
sbi-r.1	8078479	DEAD-box ATP-dependent RNA helicase 14
bdi-r.1	100840811	DEAD-box ATP-dependent RNA helicase 14
bdi-r.1	100822322	DEAD-box ATP-dependent RNA helicase 40
bdi-r.1	100835845	DEAD-box ATP-dependent RNA helicase 40
cre-r.1	CHLRE_06g291150v5	uncharacterized protein
cre-r.1	CHLRE_01g021600v5	uncharacterized protein

Top 50 coexpressed genes to AT5G14610 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G14610 (ath-m.9 coexpression data)

CoexMap"831313"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03040 [list] [network] Spliceosome (243 genes)

GO BP

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM

GO MF

Protein

NP_001190309.1 [sequence] [blastp]
NP_001331248.1 [sequence] [blastp]
NP_001331249.1 [sequence] [blastp]
NP_001331250.1 [sequence] [blastp]
NP_001331251.1 [sequence] [blastp]
NP_001331252.1 [sequence] [blastp]
NP_196965.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 2	(predict for NP_001190309.1)
cyto 6, nucl 4	(predict for NP_001331248.1)
nucl 6, cyto 4	(predict for NP_001331249.1)
nucl 8, cyto 2	(predict for NP_001331250.1)
chlo 8, vacu 1	(predict for NP_001331251.1)
chlo 8, vacu 1	(predict for NP_001331252.1)
nucl 6, cyto 4	(predict for NP_196965.2)

Subcellular
localization
TargetP

other 7	(predict for NP_001190309.1)
other 5	(predict for NP_001331248.1)
other 5	(predict for NP_001331249.1)
other 7	(predict for NP_001331250.1)
scret 7	(predict for NP_001331251.1)
scret 7	(predict for NP_001331252.1)
other 7	(predict for NP_196965.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G14610	ath-u.5 for AT5G14610	ath-r.7 for AT5G14610	ath-e.2 for AT5G14610	ath-m.4.bio for AT5G14610	ath-m.4.hor for AT5G14610	ath-m.4.lig for AT5G14610	ath-m.4.str for AT5G14610	ath-m.4.tis for AT5G14610	ath-u.5 for AT3G06480	ath-u.5 for DRH1	bra-r.6 for 103859161	bra-r.6 for 103858908	bra-r.6 for 103850938	bna-r.1 for 106436521	bna-r.1 for 106388668	bna-r.1 for 106393650	ghi-r.1 for 121219595	ghi-r.1 for 107959861	ghi-r.1 for 107951608	cit-r.1 for 102623779	cit-r.1 for 102608201	gma-u.5 for 100807830	gma-u.5 for 100786511	gma-u.5 for 100806371	vvi-u.5 for 100264477	vvi-u.5 for 100252874	ppo-u.5 for 7468130	ppo-u.5 for 7487865	ppo-u.5 for 7461318	mtr-u.5 for 11430941	mtr-u.5 for 11420002	sly-u.5 for 101254752	sly-u.5 for 101248651	sly-u.5 for 101266555	sot-r.1 for 102597020	sot-r.1 for 102584978	sot-r.1 for 102606394	nta-r.1 for 107806607	nta-r.1 for 107815007	nta-r.1 for 107823507	osa-u.5 for 4351155	osa-u.5 for 4327645	osa-u.5 for 4326190	zma-u.5 for 100381784	zma-u.5 for 100381583	zma-u.5 for 100383248	tae-r.2 for 123069901	tae-r.2 for 123068848	tae-r.2 for 123069111	hvu-r.1 for 123443664	hvu-r.1 for 123443054	hvu-r.1 for 123442857	sbi-r.1 for 110435585	sbi-r.1 for 110433588	sbi-r.1 for 8078479	bdi-r.1 for 100840811	bdi-r.1 for 100822322	bdi-r.1 for 100835845	cre-r.1 for CHLRE_06g291150v5	cre-r.1 for CHLRE_01g021600v5

Ortholog

Ortholog ID: 1620

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DRH1

Function^*

DEAD box RNA helicase family protein

DEAD box RNA helicase 1

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 14-like

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 46

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14-like

DEAD-box ATP-dependent RNA helicase 46

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46-like

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14-like

DEAD-box ATP-dependent RNA helicase 40-like

putative DEAD-box ATP-dependent RNA helicase family protein

uncharacterized LOC100383248

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	4
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03040	Spliceosome	4
bna03082	ATP-dependent chromatin remodeling	2
bna00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00564	Glycerophospholipid metabolism	2
cit00565	Ether lipid metabolism	2
cit03015	mRNA surveillance pathway	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	6
gma03040	Spliceosome	6
gma03015	mRNA surveillance pathway	5
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8
mtr03015	mRNA surveillance pathway	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3
sly04144	Endocytosis	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04144	Endocytosis	2
sot03013	Nucleocytoplasmic transport	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03022	Basal transcription factors	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	6
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	7
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	4
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

831313

819825

821116

103859161

103850938

103849856

106436521

106393650

106431761

121219595

107926050

107888678

102623779

102608201

100807830

100786511

100816455

100264477

100252874

7468130

7487865

7461318

11430941

11420002

101254752

101248651

101266555

102597020

102584978

102606394

107815007

107763320

107769931

4351155

4327645

4326190

100381784

100383248

103636001

123077632

780667

123060328

123443664

123443054

123442857

110435585

110433588

8078479

100840811

100822322

100835845

5721092

5715214

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	3	2	3	2	3	3	3	3	3	3	3	3	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G14610 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G14610 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**