ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102597020	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101254752	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101248651	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101266555	DEAD-box ATP-dependent RNA helicase 40
ath-u.5	AT3G06480	DEAD box RNA helicase family protein
ath-u.5	DRH1	DEAD box RNA helicase 1
ath-u.5	AT5G14610	DEAD box RNA helicase family protein
gma-u.5	100816455	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100786511	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100806371	DEAD-box ATP-dependent RNA helicase 40
vvi-u.5	100252874	DEAD-box ATP-dependent RNA helicase 46
vvi-u.5	100264477	ATP-dependent RNA helicase-like protein DB10
ppo-u.5	7461318	DEAD-box ATP-dependent RNA helicase 14-like
ppo-u.5	7468130	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7487865	DEAD-box ATP-dependent RNA helicase 46
mtr-u.5	11430941	DEAD-box ATP-dependent RNA helicase 46
mtr-u.5	11420002	DEAD-box ATP-dependent RNA helicase 46
osa-u.5	4351155	DEAD-box ATP-dependent RNA helicase 40
osa-u.5	4327645	DEAD-box ATP-dependent RNA helicase 14-like
osa-u.5	4326190	DEAD-box ATP-dependent RNA helicase 40-like
zma-u.5	100383248	uncharacterized LOC100383248
zma-u.5	100381583	DEAD-box ATP-dependent RNA helicase 40
zma-u.5	109945984	DEAD-box ATP-dependent RNA helicase 40

Top 50 coexpressed genes to 102597020 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102597020 (sot-r.1 coexpression data)

CoexMap"102597020"

[Cytoscape]

Annotation

functional annotation

KEGG

sot03040 [list] [network] Spliceosome (223 genes)

GO BP

GO CC

GO MF

GO:0003724 [list] [network] RNA helicase activity	(63 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2117 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3830 genes)	IEA
GO:0005515 [list] [network] protein binding	(4214 genes)	IEA

Protein

XP_006338578.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto 1, chlo 1, cysk 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_006338578.1)

Subcellular
localization
TargetP

other 9

(predict for XP_006338578.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102597020	sly-u.5 for 101254752	sly-u.5 for 101248651	sly-u.5 for 101266555	ath-u.5 for AT3G06480	ath-u.5 for DRH1	ath-u.5 for AT5G14610	gma-u.5 for 100816455	gma-u.5 for 100786511	gma-u.5 for 100806371	vvi-u.5 for 100252874	vvi-u.5 for 100264477	ppo-u.5 for 7461318	ppo-u.5 for 7468130	ppo-u.5 for 7487865	mtr-u.5 for 11430941	mtr-u.5 for 11420002	osa-u.5 for 4351155	osa-u.5 for 4327645	osa-u.5 for 4326190	zma-u.5 for 100383248	zma-u.5 for 100381583	zma-u.5 for 109945984

Ortholog

Ortholog ID: 1620

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46-like

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

DEAD box RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 46

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 40

uncharacterized LOC100383248

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 40

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04144	Endocytosis	2
sot03013	Nucleocytoplasmic transport	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8
mtr03015	mRNA surveillance pathway	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03040	Spliceosome	4
bna03082	ATP-dependent chromatin remodeling	2
bna00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00564	Glycerophospholipid metabolism	2
cit00565	Ether lipid metabolism	2
cit03015	mRNA surveillance pathway	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03022	Basal transcription factors	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	6
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	7
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	4
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

102606394

102584978

101254752

101266555

107769931

107815007

831313

819825

100816455

100786511

103849856

103850938

100264477

100252874

7468130

7487865

11430941

11420002

121219595

107926050

106431761

106393650

102623779

102608201

4326190

4351155

100383248

103636001

123077632

123060328

123443054

123442857

110435585

110433588

100835845

100822322

5721092

5715214

The preparation time of this page was 0.2 [sec].


Species	sot	sly	ath	gma	vvi	ppo	mtr	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	nta	cre	tae
Paralog	1	3	3	3	2	3	2	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102597020 (sot-r.1 coexpression data)

Top 50 enrichment test to 102597020 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**