ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	123060328	DEAD-box ATP-dependent RNA helicase 40
tae-r.2	123069901	DEAD-box ATP-dependent RNA helicase 40
tae-r.2	123069111	DEAD-box ATP-dependent RNA helicase 14
tae-r.2	123077348	DEAD-box ATP-dependent RNA helicase 40
hvu-r.1	123443664	DEAD-box ATP-dependent RNA helicase 40-like
hvu-r.1	123443054	DEAD-box ATP-dependent RNA helicase 14
hvu-r.1	123442857	DEAD-box ATP-dependent RNA helicase 40-like
bdi-r.1	100840811	DEAD-box ATP-dependent RNA helicase 14
bdi-r.1	100822322	DEAD-box ATP-dependent RNA helicase 40
bdi-r.1	100835845	DEAD-box ATP-dependent RNA helicase 40
osa-u.5	4351155	DEAD-box ATP-dependent RNA helicase 40
osa-u.5	4327645	DEAD-box ATP-dependent RNA helicase 14-like
osa-u.5	4326190	DEAD-box ATP-dependent RNA helicase 40-like
zma-u.5	100383248	uncharacterized LOC100383248
zma-u.5	100381583	DEAD-box ATP-dependent RNA helicase 40
zma-u.5	109945984	DEAD-box ATP-dependent RNA helicase 40
sbi-r.1	110433588	DEAD-box ATP-dependent RNA helicase 40-like
sbi-r.1	110435585	DEAD-box ATP-dependent RNA helicase 40-like
sbi-r.1	8078479	DEAD-box ATP-dependent RNA helicase 14
ath-u.5	AT3G06480	DEAD box RNA helicase family protein
ath-u.5	DRH1	DEAD box RNA helicase 1
ath-u.5	AT5G14610	DEAD box RNA helicase family protein
gma-u.5	100816455	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100786511	DEAD-box ATP-dependent RNA helicase 46
gma-u.5	100806371	DEAD-box ATP-dependent RNA helicase 40
sly-u.5	101254752	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101248651	ATP-dependent RNA helicase-like protein DB10
sly-u.5	101266555	DEAD-box ATP-dependent RNA helicase 40
bra-r.6	103849856	DEAD-box ATP-dependent RNA helicase 14
bra-r.6	103859161	DEAD-box ATP-dependent RNA helicase 40
bra-r.6	103850938	DEAD-box ATP-dependent RNA helicase 46
vvi-u.5	100264477	ATP-dependent RNA helicase-like protein DB10
vvi-u.5	100252874	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7461318	DEAD-box ATP-dependent RNA helicase 14-like
ppo-u.5	7487865	DEAD-box ATP-dependent RNA helicase 46
ppo-u.5	7468130	DEAD-box ATP-dependent RNA helicase 46
mtr-u.5	11420002	DEAD-box ATP-dependent RNA helicase 46
mtr-u.5	11430941	DEAD-box ATP-dependent RNA helicase 46
ghi-r.1	107888678	DEAD-box ATP-dependent RNA helicase 14
ghi-r.1	107892276	DEAD-box ATP-dependent RNA helicase 14
ghi-r.1	107926050	DEAD-box ATP-dependent RNA helicase 46
bna-r.1	106431761	DEAD-box ATP-dependent RNA helicase 40
bna-r.1	106367212	DEAD-box ATP-dependent RNA helicase 46
bna-r.1	106393650	DEAD-box ATP-dependent RNA helicase 14
sot-r.1	102597020	ATP-dependent RNA helicase-like protein DB10
sot-r.1	102584978	DEAD-box ATP-dependent RNA helicase 46-like
sot-r.1	102606394	ATP-dependent RNA helicase-like protein DB10
cit-r.1	102623779	DEAD-box ATP-dependent RNA helicase 46
cit-r.1	102608201	DEAD-box ATP-dependent RNA helicase 46
nta-r.1	107769931	ATP-dependent RNA helicase-like protein DB10
nta-r.1	107806607	ATP-dependent RNA helicase-like protein DB10
nta-r.1	107815007	DEAD-box ATP-dependent RNA helicase 40
cre-r.1	CHLRE_01g021600v5	uncharacterized protein
cre-r.1	CHLRE_06g291150v5	uncharacterized protein

Top 50 coexpressed genes to 123060328 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 123060328 (tae-r.2 coexpression data)

CoexMap"123060328"

[Cytoscape]

Annotation

functional annotation

KEGG

taes03040 [list] [network] Spliceosome (1516 genes)

GO BP

GO CC

GO MF

GO:0003724 [list] [network] RNA helicase activity	(186 genes)	IEA
GO:0005524 [list] [network] ATP binding	(7858 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(11810 genes)	IEA
GO:0005515 [list] [network] protein binding	(16249 genes)	IEA

Protein

XP_044338933.1 [sequence] [blastp]
XP_044338935.1 [sequence] [blastp]
XP_044338936.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_044338933.1)
nucl 10	(predict for XP_044338935.1)
nucl 10	(predict for XP_044338936.1)

Subcellular
localization
TargetP

other 9	(predict for XP_044338933.1)
other 9	(predict for XP_044338935.1)
other 9	(predict for XP_044338936.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123060328	tae-r.2 for 123069901	tae-r.2 for 123069111	tae-r.2 for 123077348	hvu-r.1 for 123443664	hvu-r.1 for 123443054	hvu-r.1 for 123442857	bdi-r.1 for 100840811	bdi-r.1 for 100822322	bdi-r.1 for 100835845	osa-u.5 for 4351155	osa-u.5 for 4327645	osa-u.5 for 4326190	zma-u.5 for 100383248	zma-u.5 for 100381583	zma-u.5 for 109945984	sbi-r.1 for 110433588	sbi-r.1 for 110435585	sbi-r.1 for 8078479	ath-u.5 for AT3G06480	ath-u.5 for DRH1	ath-u.5 for AT5G14610	gma-u.5 for 100816455	gma-u.5 for 100786511	gma-u.5 for 100806371	sly-u.5 for 101254752	sly-u.5 for 101248651	sly-u.5 for 101266555	bra-r.6 for 103849856	bra-r.6 for 103859161	bra-r.6 for 103850938	vvi-u.5 for 100264477	vvi-u.5 for 100252874	ppo-u.5 for 7461318	ppo-u.5 for 7487865	ppo-u.5 for 7468130	mtr-u.5 for 11420002	mtr-u.5 for 11430941	ghi-r.1 for 107888678	ghi-r.1 for 107892276	ghi-r.1 for 107926050	bna-r.1 for 106431761	bna-r.1 for 106367212	bna-r.1 for 106393650	sot-r.1 for 102597020	sot-r.1 for 102584978	sot-r.1 for 102606394	cit-r.1 for 102623779	cit-r.1 for 102608201	nta-r.1 for 107769931	nta-r.1 for 107806607	nta-r.1 for 107815007	cre-r.1 for CHLRE_01g021600v5	cre-r.1 for CHLRE_06g291150v5

Ortholog

Ortholog ID: 1620

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

DRH1

Function^*

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14-like

DEAD-box ATP-dependent RNA helicase 40-like

uncharacterized LOC100383248

DEAD-box ATP-dependent RNA helicase 40

putative DEAD-box ATP-dependent RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 40-like

DEAD-box ATP-dependent RNA helicase 14

DEAD box RNA helicase family protein

DEAD box RNA helicase 1

DEAD box RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 40

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 46

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14-like

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 46

DEAD-box ATP-dependent RNA helicase 40

DEAD-box ATP-dependent RNA helicase 14

DEAD-box ATP-dependent RNA helicase 14-like

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46-like

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 46

ATP-dependent RNA helicase-like protein DB10

DEAD-box ATP-dependent RNA helicase 40

ATP-dependent RNA helicase-like protein DB10

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03022	Basal transcription factors	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	6
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	4
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	7
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03250	Viral life cycle - HIV-1	6
gma03040	Spliceosome	6
gma03015	mRNA surveillance pathway	5
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03040	Spliceosome	3
sly04144	Endocytosis	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	4
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	8
mtr03015	mRNA surveillance pathway	3
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi00310	Lysine degradation	2
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	6
bna03040	Spliceosome	4
bna03082	ATP-dependent chromatin remodeling	2
bna00340	Histidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04141	Protein processing in endoplasmic reticulum	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot04144	Endocytosis	2
sot03013	Nucleocytoplasmic transport	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00564	Glycerophospholipid metabolism	2
cit00565	Ether lipid metabolism	2
cit03015	mRNA surveillance pathway	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta04075	Plant hormone signal transduction	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6

Expression

Expression pattern

Entrez Gene ID^*

123060328

123077632

780667

123443664

123443054

123442857

100840811

100822322

100835845

4351155

4327645

4326190

100383248

103636001

100381784

110433588

110435585

8078479

819825

821116

831313

100816455

100786511

100807830

101254752

101248651

101266555

103849856

103859161

103850938

100264477

100252874

7461318

7487865

7468130

11420002

11430941

107888678

107926050

121219595

106431761

106393650

106436521

102597020

102584978

102606394

102623779

102608201

107769931

107815007

107763320

5715214

5721092

The preparation time of this page was 0.3 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	3	2	3	2	3	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123060328 (tae-r.2 coexpression data)

Top 50 enrichment test to 123060328 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**