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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G42200   RING/U-box superfamily protein 
 ath-u.5   AT5G42200   RING/U-box superfamily protein 
 ath-r.7   AT5G42200   RING/U-box superfamily protein 
 ath-e.2   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.bio   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.hor   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.lig   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.str   AT5G42200   RING/U-box superfamily protein 
 ath-m.4.tis   AT5G42200   RING/U-box superfamily protein 
 bra-r.6   103832296   E3 ubiquitin-protein ligase ATL23 
 bna-r.1   111202631   E3 ubiquitin-protein ligase ATL23-like 
 ghi-r.1   107958200   E3 ubiquitin-protein ligase ATL23 
 ghi-r.1   107938144   E3 ubiquitin-protein ligase ATL23 
 cit-r.1   112498303   RING-H2 finger protein ATL56-like 
 cit-r.1   107176377   E3 ubiquitin-protein ligase ATL23 
 gma-u.5   102667575   E3 ubiquitin-protein ligase ATL23 
 gma-u.5   100811160   E3 ubiquitin-protein ligase ATL23 
 vvi-u.5   100853467   RING-H2 finger protein ATL56 
 ppo-u.5   7493995   E3 ubiquitin-protein ligase ATL23 
 ppo-u.5   7490624   E3 ubiquitin-protein ligase ATL23 
 mtr-u.5   120577925   E3 ubiquitin-protein ligase ATL23 
 sly-u.5   101245541   E3 ubiquitin-protein ligase ATL23 
 sot-r.1   102579819   E3 ubiquitin-protein ligase ATL23 
 sot-r.1   102588173   RING-H2 finger protein ATL3-like 
 nta-r.1   107813148   RING-H2 finger protein ATL77-like 
 nta-r.1   107811578   uncharacterized LOC107811578 
 osa-u.5   107280049   E3 ubiquitin-protein ligase ATL41-like 
 bdi-r.1   100834671   E3 ubiquitin-protein ligase ATL23 

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Top 50 coexpressed genes to AT5G42200 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G42200 (ath-m.9 coexpression data)

CoexMap"834225"


athAT5G42200 | Entrez gene ID : 834225      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa bdi sbi cre tae zma hvu
Paralog 9 1 1 2 2 2 1 2 1 1 2 2 1 1 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_199035.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  vacu 1  (predict for NP_199035.1)
Subcellular
localization
TargetP
other 7  (predict for NP_199035.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G42200
ath-u.5
for
AT5G42200
ath-r.7
for
AT5G42200
ath-e.2
for
AT5G42200
ath-m.4.bio
for
AT5G42200
ath-m.4.hor
for
AT5G42200
ath-m.4.lig
for
AT5G42200
ath-m.4.str
for
AT5G42200
ath-m.4.tis
for
AT5G42200
bra-r.6
for
103832296
bna-r.1
for
111202631
ghi-r.1
for
107958200
ghi-r.1
for
107938144
cit-r.1
for
112498303
cit-r.1
for
107176377
gma-u.5
for
102667575
gma-u.5
for
100811160
vvi-u.5
for
100853467
ppo-u.5
for
7493995
ppo-u.5
for
7490624
mtr-u.5
for
120577925
sly-u.5
for
101245541
sot-r.1
for
102579819
sot-r.1
for
102588173
nta-r.1
for
107813148
nta-r.1
for
107811578
osa-u.5
for
107280049
bdi-r.1
for
100834671


Ortholog ID: 1553
Species ath bra bna ghi ghi cit cit gma gma vvi ppo ppo mtr sly sot sot nta nta osa bdi
Symbol AT5G42200 LOC103832296 LOC111202631 LOC107938144 LOC107905539 LOC112498303 LOC107176377 LOC102667575 LOC100776003 LOC104878763 LOC7493995 LOC7490624 LOC120577925 LOC101245541 LOC102579819 LOC102588173 LOC107813148 LOC107798329 LOC107280049 LOC100834671
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23-like E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 RING-H2 finger protein ATL56-like E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 RING-H2 finger protein ATL80 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 E3 ubiquitin-protein ligase ATL23 RING-H2 finger protein ATL3-like RING-H2 finger protein ATL77-like E3 ubiquitin-protein ligase ATL23-like E3 ubiquitin-protein ligase ATL41-like E3 ubiquitin-protein ligase ATL23
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 4
bna00564 Glycerophospholipid metabolism 4
bna00565 Ether lipid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 3
nta04120 Ubiquitin mediated proteolysis 2
nta04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834225 103832296 111202631 107938144 107905539 112498303 107176377 102667575 100776003 104878763 7493995 7490624 120577925 101245541 102579819 102588173 107813148 107798329 107280049 100834671
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