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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-u.5   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-r.7   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-e.2   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-m.4.bio   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-m.4.hor   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-m.4.lig   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-m.4.str   RPE   D-ribulose-5-phosphate-3-epimerase 
 ath-m.4.tis   RPE   D-ribulose-5-phosphate-3-epimerase 
 bra-r.6   103860590   ribulose-5-phosphate-3-epimerase, chloroplastic 
 bra-r.6   103847037   ribulose-5-phosphate-3-epimerase, chloroplastic 
 bna-r.1   125581642   ribulose-phosphate 3-epimerase, chloroplastic-like 
 bna-r.1   106380117   ribulose-5-phosphate-3-epimerase, chloroplastic 
 bna-r.1   106419386   ribulose-5-phosphate-3-epimerase, chloroplastic 
 ghi-r.1   121211034   ribulose-5-phosphate-3-epimerase, chloroplastic 
 ghi-r.1   107953525   ribulose-phosphate 3-epimerase, chloroplastic 
 ghi-r.1   107951272   ribulose-5-phosphate-3-epimerase, chloroplastic 
 cit-r.1   102609480   ribulose-5-phosphate-3-epimerase, chloroplastic 
 gma-u.5   100817791   putative D-ribulose-5-phosphate-3-epimerase 
 gma-u.5   100786514   ribulose-phosphate 3-epimerase, chloroplastic 
 vvi-u.5   100267206   ribulose-5-phosphate-3-epimerase, chloroplastic 
 ppo-u.5   18105789   ribulose-5-phosphate-3-epimerase, chloroplastic 
 mtr-u.5   25493830   ribulose-phosphate 3-epimerase, chloroplastic 
 sly-u.5   101264109   ribulose-phosphate 3-epimerase, chloroplastic 
 sot-r.1   102594969   ribulose-phosphate 3-epimerase, chloroplastic-like 
 nta-r.1   107831470   ribulose-phosphate 3-epimerase, chloroplastic 
 nta-r.1   107818980   ribulose-phosphate 3-epimerase, chloroplastic-like 
 osa-u.5   4331761   ribulose-phosphate 3-epimerase, chloroplastic-like 
 zma-u.5   100274365   Ribulose-phosphate 3-epimerase 
 zma-u.5   100282201   ribulose-phosphate 3-epimerase 
 tae-r.2   123084787   ribulose-phosphate 3-epimerase, chloroplastic 
 tae-r.2   123093298   ribulose-phosphate 3-epimerase, chloroplastic 
 tae-r.2   123098569   ribulose-phosphate 3-epimerase, chloroplastic 
 hvu-r.1   123449548   ribulose-phosphate 3-epimerase, chloroplastic 
 sbi-r.1   110433451   ribulose-phosphate 3-epimerase, chloroplastic 
 cre-r.1   CHLRE_12g511900v5   uncharacterized protein 

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Top 50 coexpressed genes to RPE (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RPE (ath-m.9 coexpression data)

CoexMap"836262"


athRPE | Entrez gene ID : 836262      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi cre bdi
Paralog 9 2 3 3 1 2 1 1 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00030 [list] [network] Pentose phosphate pathway (58 genes)
ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
ath00710 [list] [network] Carbon fixation by Calvin cycle (71 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
ath01230 [list] [network] Biosynthesis of amino acids (242 genes)
GO BP
GO:0009624 [list] [network] response to nematode  (90 genes)  IMP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  NAS  
GO CC
GO:0010319 [list] [network] stromule  (37 genes)  IDA  
GO:0048046 [list] [network] apoplast  (340 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
Protein NP_200949.1 [sequence] [blastp]
NP_851240.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for NP_200949.1)
chlo 9,  chlo_mito 5  (predict for NP_851240.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_200949.1)
chlo 9  (predict for NP_851240.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RPE
ath-u.5
for
RPE
ath-r.7
for
RPE
ath-e.2
for
RPE
ath-m.4.bio
for
RPE
ath-m.4.hor
for
RPE
ath-m.4.lig
for
RPE
ath-m.4.str
for
RPE
ath-m.4.tis
for
RPE
bra-r.6
for
103860590
bra-r.6
for
103847037
bna-r.1
for
125581642
bna-r.1
for
106380117
bna-r.1
for
106419386
ghi-r.1
for
121211034
ghi-r.1
for
107953525
ghi-r.1
for
107951272
cit-r.1
for
102609480
gma-u.5
for
100817791
gma-u.5
for
100786514
vvi-u.5
for
100267206
ppo-u.5
for
18105789
mtr-u.5
for
25493830
sly-u.5
for
101264109
sot-r.1
for
102594969
nta-r.1
for
107831470
nta-r.1
for
107818980
osa-u.5
for
4331761
zma-u.5
for
100274365
zma-u.5
for
100282201
tae-r.2
for
123084787
tae-r.2
for
123093298
tae-r.2
for
123098569
hvu-r.1
for
123449548
sbi-r.1
for
110433451
cre-r.1
for
CHLRE_12g511900v5


Ortholog ID: 7005
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi cre
Symbol RPE LOC103860590 LOC103847037 LOC125581642 LOC106380117 LOC106428081 LOC121211034 LOC107953525 LOC107951272 LOC102609480 LOC100817791 LOC100786514 LOC100267206 LOC18105789 LOC25493830 LOC101264109 LOC102594969 LOC107831470 LOC107818980 LOC4331761 LOC100274365 LOC100282201 LOC123084787 LOC123093298 LOC123098569 LOC123449548 LOC110433451 CHLRE_12g511900v5
Function* D-ribulose-5-phosphate-3-epimerase ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic-like ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic putative D-ribulose-5-phosphate-3-epimerase ribulose-phosphate 3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-5-phosphate-3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic-like ribulose-phosphate 3-epimerase, chloroplastic-like Ribulose-phosphate 3-epimerase ribulose-phosphate 3-epimerase ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic ribulose-phosphate 3-epimerase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 5
ath01200 Carbon metabolism 3
ath00710 Carbon fixation by Calvin cycle 2
ath03060 Protein export 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra01200 Carbon metabolism 6
bra00710 Carbon fixation by Calvin cycle 4
bra01230 Biosynthesis of amino acids 4
bra00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra01230 Biosynthesis of amino acids 5
bra00260 Glycine, serine and threonine metabolism 3
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 11
bna00710 Carbon fixation by Calvin cycle 8
bna01230 Biosynthesis of amino acids 7
bna00030 Pentose phosphate pathway 4
bna00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01200 Carbon metabolism 11
bna00260 Glycine, serine and threonine metabolism 7
bna01230 Biosynthesis of amino acids 7
bna00460 Cyanoamino acid metabolism 5
bna00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
bna00030 Pentose phosphate pathway 4
bna00040 Pentose and glucuronate interconversions 4
bna00710 Carbon fixation by Calvin cycle 4
bna01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00030 Pentose phosphate pathway 4
ghi00040 Pentose and glucuronate interconversions 4
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 4
cit00190 Oxidative phosphorylation 3
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 8
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00710 Carbon fixation by Calvin cycle 4
gma00260 Glycine, serine and threonine metabolism 2
gma00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00030 Pentose phosphate pathway 2
gma00040 Pentose and glucuronate interconversions 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 5
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00710 Carbon fixation by Calvin cycle 2
vvi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00630 Glyoxylate and dicarboxylate metabolism 6
ppo00260 Glycine, serine and threonine metabolism 5
ppo00710 Carbon fixation by Calvin cycle 4
ppo00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr01200 Carbon metabolism 3
mtr00030 Pentose phosphate pathway 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 6
sly01200 Carbon metabolism 4
sly00710 Carbon fixation by Calvin cycle 3
sly00030 Pentose phosphate pathway 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00710 Carbon fixation by Calvin cycle 6
sot01230 Biosynthesis of amino acids 6
sot00010 Glycolysis / Gluconeogenesis 4
sot00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00195 Photosynthesis 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 5
nta00190 Oxidative phosphorylation 4
nta00040 Pentose and glucuronate interconversions 3
nta00030 Pentose phosphate pathway 2
nta00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 7
osa00710 Carbon fixation by Calvin cycle 6
osa01230 Biosynthesis of amino acids 5
osa00030 Pentose phosphate pathway 3
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 5
zma00030 Pentose phosphate pathway 4
zma00710 Carbon fixation by Calvin cycle 4
zma01230 Biosynthesis of amino acids 4
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00030 Pentose phosphate pathway 4
zma00710 Carbon fixation by Calvin cycle 4
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae00030 Pentose phosphate pathway 3
tae00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 9
tae01200 Carbon metabolism 9
tae01230 Biosynthesis of amino acids 9
tae00030 Pentose phosphate pathway 6
tae00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00710 Carbon fixation by Calvin cycle 4
hvu01200 Carbon metabolism 4
hvu01230 Biosynthesis of amino acids 3
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00710 Carbon fixation by Calvin cycle 4
sbi01200 Carbon metabolism 4
sbi00620 Pyruvate metabolism 3
sbi03010 Ribosome 3
sbi00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 5
cre01200 Carbon metabolism 5
cre00500 Starch and sucrose metabolism 4
cre00030 Pentose phosphate pathway 4
cre00520 Amino sugar and nucleotide sugar metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836262 103860590 103847037 125581642 106380117 106428081 121211034 107953525 107951272 102609480 100817791 100786514 100267206 18105789 25493830 101264109 102594969 107831470 107818980 4331761 100274365 100282201 123084787 123093298 123098569 123449548 110433451 5716597
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