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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SDN3   small RNA degrading nuclease 3 
 ath-u.5   SDN3   small RNA degrading nuclease 3 
 ath-r.7   SDN3   small RNA degrading nuclease 3 
 ath-e.2   SDN3   small RNA degrading nuclease 3 
 ath-m.4.bio   SDN3   small RNA degrading nuclease 3 
 ath-m.4.hor   SDN3   small RNA degrading nuclease 3 
 ath-m.4.lig   SDN3   small RNA degrading nuclease 3 
 ath-m.4.str   SDN3   small RNA degrading nuclease 3 
 ath-m.4.tis   SDN3   small RNA degrading nuclease 3 
 ath-u.5   SDN1   small RNA degrading nuclease 1 
 ath-u.5   SDN2   small RNA degrading nuclease 2 
 bra-r.6   103840928   small RNA degrading nuclease 1 
 bra-r.6   103829878   small RNA degrading nuclease 3-like 
 bra-r.6   103829525   small RNA degrading nuclease 3 
 bna-r.1   106418773   small RNA degrading nuclease 1-like 
 ghi-r.1   107913580   small RNA degrading nuclease 1 
 ghi-r.1   107891333   small RNA degrading nuclease 3 
 cit-r.1   102628898   small RNA degrading nuclease 3 
 gma-u.5   100785565   small RNA degrading nuclease 3 
 vvi-u.5   100254172   small RNA degrading nuclease 1 
 ppo-u.5   7483093   small RNA degrading nuclease 1 
 mtr-u.5   25485770   small RNA degrading nuclease 1 
 sly-u.5   101248438   small RNA degrading nuclease 1-like 
 sot-r.1   102581137   small RNA degrading nuclease 1-like 
 nta-r.1   107789218   small RNA degrading nuclease 1-like 
 nta-r.1   107816016   small RNA degrading nuclease 1-like 
 nta-r.1   107789081   small RNA degrading nuclease 1 
 osa-u.5   4337228   small RNA degrading nuclease 1 
 zma-u.5   103645842   small RNA degrading nuclease 1 
 tae-r.2   123050356   small RNA degrading nuclease 3 
 tae-r.2   123190761   small RNA degrading nuclease 1 
 hvu-r.1   123428130   small RNA degrading nuclease 1-like 
 sbi-r.1   8068490   small RNA degrading nuclease 1 
 bdi-r.1   100838655   small RNA degrading nuclease 1 
 cre-r.1   CHLRE_07g340750v5   uncharacterized protein 
 cre-r.1   CHLRE_01g036600v5   uncharacterized protein 

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Top 50 coexpressed genes to SDN3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SDN3 (ath-m.9 coexpression data)

CoexMap"836859"


athSDN3 | Entrez gene ID : 836859      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 1 2 1 1 1 1 1 1 1 3 1 1 2 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001318895.1 [sequence] [blastp]
NP_001331563.1 [sequence] [blastp]
NP_001331564.1 [sequence] [blastp]
NP_201525.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  chlo 1,  plas 1  (predict for NP_001318895.1)
cyto 5,  nucl 3,  cyto_plas 3  (predict for NP_001331563.1)
cyto 6,  chlo 1,  nucl 1  (predict for NP_001331564.1)
cyto 4,  nucl 4,  chlo 1  (predict for NP_201525.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001318895.1)
other 9  (predict for NP_001331563.1)
other 9  (predict for NP_001331564.1)
other 9  (predict for NP_201525.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SDN3
ath-u.5
for
SDN3
ath-r.7
for
SDN3
ath-e.2
for
SDN3
ath-m.4.bio
for
SDN3
ath-m.4.hor
for
SDN3
ath-m.4.lig
for
SDN3
ath-m.4.str
for
SDN3
ath-m.4.tis
for
SDN3
ath-u.5
for
SDN1
ath-u.5
for
SDN2
bra-r.6
for
103840928
bra-r.6
for
103829878
bra-r.6
for
103829525
bna-r.1
for
106418773
ghi-r.1
for
107913580
ghi-r.1
for
107891333
cit-r.1
for
102628898
gma-u.5
for
100785565
vvi-u.5
for
100254172
ppo-u.5
for
7483093
mtr-u.5
for
25485770
sly-u.5
for
101248438
sot-r.1
for
102581137
nta-r.1
for
107789218
nta-r.1
for
107816016
nta-r.1
for
107789081
osa-u.5
for
4337228
zma-u.5
for
103645842
tae-r.2
for
123050356
tae-r.2
for
123190761
hvu-r.1
for
123428130
sbi-r.1
for
8068490
bdi-r.1
for
100838655
cre-r.1
for
CHLRE_07g340750v5
cre-r.1
for
CHLRE_01g036600v5


Ortholog ID: 4405
Species ath ath bra bra bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta nta osa zma tae tae hvu sbi bdi cre cre
Symbol SDN1 SDN2 LOC103840928 LOC103829878 LOC103829525 LOC106390333 LOC106346009 LOC106366788 LOC107913580 LOC107891333 LOC102628898 LOC100785565 LOC100254172 LOC7483093 LOC25485770 LOC101248438 LOC102581137 LOC107816016 LOC107789081 LOC107798545 LOC4337228 LOC103645842 LOC123050356 LOC123047099 LOC123428130 LOC8068490 LOC100838655 CHLRE_07g340750v5 CHLRE_01g036600v5
Function* small RNA degrading nuclease 1 small RNA degrading nuclease 2 small RNA degrading nuclease 1 small RNA degrading nuclease 3-like small RNA degrading nuclease 3 small RNA degrading nuclease 3 small RNA degrading nuclease 2-like small RNA degrading nuclease 3-like small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 3 small RNA degrading nuclease 3 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1-like small RNA degrading nuclease 1-like small RNA degrading nuclease 1-like small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 1 small RNA degrading nuclease 3 small RNA degrading nuclease 1 small RNA degrading nuclease 1-like small RNA degrading nuclease 1 small RNA degrading nuclease 1 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 8
bra03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 5
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03050 Proteasome 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 10
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824172 830437 103840928 103829878 103829525 106390333 106346009 106366788 107913580 107891333 102628898 100785565 100254172 7483093 25485770 101248438 102581137 107816016 107789081 107798545 4337228 103645842 123050356 123047099 123428130 8068490 100838655 5718102 66052100
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