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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CJD1   Chloroplast J-like domain 1 
 ath-u.5   CJD1   Chloroplast J-like domain 1 
 ath-r.7   CJD1   Chloroplast J-like domain 1 
 ath-e.2   CJD1   Chloroplast J-like domain 1 
 ath-m.4.bio   CJD1   Chloroplast J-like domain 1 
 ath-m.4.hor   CJD1   Chloroplast J-like domain 1 
 ath-m.4.lig   CJD1   Chloroplast J-like domain 1 
 ath-m.4.str   CJD1   Chloroplast J-like domain 1 
 ath-m.4.tis   CJD1   Chloroplast J-like domain 1 
 bra-r.6   103871607   uncharacterized LOC103871607 
 bna-r.1   106346317   uncharacterized LOC106346317 
 bna-r.1   111198164   uncharacterized LOC111198164 
 ghi-r.1   107962960   uncharacterized LOC107962960 
 ghi-r.1   121223478   uncharacterized LOC121223478 
 cit-r.1   102612297   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 gma-u.5   100814672   uncharacterized LOC100814672 
 gma-u.5   100805399   uncharacterized LOC100805399 
 vvi-u.5   100243269   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 ppo-u.5   7487178   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 ppo-u.5   7474622   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 mtr-u.5   25499715   uncharacterized LOC25499715 
 sly-u.5   101248473   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 sot-r.1   102589954   uncharacterized LOC102589954 
 nta-r.1   107832639   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 nta-r.1   107779229   protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic 
 osa-u.5   4344571   uncharacterized LOC4344571 
 osa-u.5   4348904   uncharacterized LOC4348904 
 zma-u.5   100272810   Chloroplast J-like domain 1 
 zma-u.5   100217132   Chloroplast J-like domain 1 
 tae-r.2   123159367   uncharacterized LOC123159367 
 tae-r.2   123169808   uncharacterized LOC123169808 
 tae-r.2   123147480   uncharacterized LOC123147480 
 hvu-r.1   123407576   uncharacterized LOC123407576 
 sbi-r.1   8074057   uncharacterized LOC8074057 
 bdi-r.1   100821624   uncharacterized LOC100821624 
 cre-r.1   CHLRE_03g171100v5   uncharacterized protein 

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Top 50 coexpressed genes to CJD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CJD1 (ath-m.9 coexpression data)

CoexMap"837386"


athCJD1 | Entrez gene ID : 837386      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 1 1 1 2 2 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006631 [list] [network] fatty acid metabolic process  (185 genes)  IMP  
GO CC
GO:0031969 [list] [network] chloroplast membrane  (123 genes)  IDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_563823.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_563823.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_563823.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CJD1
ath-u.5
for
CJD1
ath-r.7
for
CJD1
ath-e.2
for
CJD1
ath-m.4.bio
for
CJD1
ath-m.4.hor
for
CJD1
ath-m.4.lig
for
CJD1
ath-m.4.str
for
CJD1
ath-m.4.tis
for
CJD1
bra-r.6
for
103871607
bna-r.1
for
106346317
bna-r.1
for
111198164
ghi-r.1
for
107962960
ghi-r.1
for
121223478
cit-r.1
for
102612297
gma-u.5
for
100814672
gma-u.5
for
100805399
vvi-u.5
for
100243269
ppo-u.5
for
7487178
ppo-u.5
for
7474622
mtr-u.5
for
25499715
sly-u.5
for
101248473
sot-r.1
for
102589954
nta-r.1
for
107832639
nta-r.1
for
107779229
osa-u.5
for
4344571
osa-u.5
for
4348904
zma-u.5
for
100272810
zma-u.5
for
100217132
tae-r.2
for
123159367
tae-r.2
for
123169808
tae-r.2
for
123147480
hvu-r.1
for
123407576
sbi-r.1
for
8074057
bdi-r.1
for
100821624
cre-r.1
for
CHLRE_03g171100v5


Ortholog ID: 7784
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol CJD1 LOC103871607 LOC106346317 LOC111198164 LOC107962960 LOC121223478 LOC102612297 LOC100814672 LOC100805399 LOC100243269 LOC7487178 LOC7474622 LOC25499715 LOC101248473 LOC102589954 LOC107832639 LOC107779229 LOC4344571 LOC4348904 LOC100272810 LOC100217132 LOC123159367 LOC123169808 LOC123045702 LOC123407576 LOC8074057 LOC100821624 CHLRE_03g171100v5
Function* Chloroplast J-like domain 1 uncharacterized LOC103871607 uncharacterized LOC106346317 uncharacterized LOC111198164 uncharacterized LOC107962960 uncharacterized LOC121223478 protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic uncharacterized LOC100814672 uncharacterized LOC100805399 protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic uncharacterized LOC25499715 protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic uncharacterized LOC102589954 protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic protein CHLOROPLAST J-LIKE DOMAIN 1, chloroplastic uncharacterized LOC4344571 uncharacterized LOC4348904 Chloroplast J-like domain 1 Chloroplast J-like domain 1 uncharacterized LOC123159367 uncharacterized LOC123169808 uncharacterized LOC123045702 uncharacterized LOC123407576 uncharacterized LOC8074057 uncharacterized LOC100821624 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 4
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00860 Porphyrin metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma01230 Biosynthesis of amino acids 3
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 4
gma01240 Biosynthesis of cofactors 4
gma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 4
sot00860 Porphyrin metabolism 3
sot00061 Fatty acid biosynthesis 2
sot01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 3
nta01232 Nucleotide metabolism 3
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 4
nta01232 Nucleotide metabolism 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 3
osa00300 Lysine biosynthesis 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00261 Monobactam biosynthesis 3
tae00300 Lysine biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae00562 Inositol phosphate metabolism 3
tae00920 Sulfur metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 4
hvu00860 Porphyrin metabolism 3
hvu00300 Lysine biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 4
bdi01240 Biosynthesis of cofactors 3
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 5
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837386 103871607 106346317 111198164 107962960 121223478 102612297 100814672 100805399 100243269 7487178 7474622 25499715 101248473 102589954 107832639 107779229 4344571 4348904 100272810 100217132 123159367 123169808 123045702 123407576 8074057 100821624 66052833
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