ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-r.7	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-e.2	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.bio	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.hor	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.lig	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.str	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.tis	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT1G05120	Helicase protein with RING/U-box domain-containing protein
bra-r.6	103844170	DNA repair protein RAD16
bra-r.6	103836539	DNA repair protein RAD16
bra-r.6	103844175	ATP-dependent helicase rhp16
bna-r.1	106400558	ATP-dependent helicase rhp16
bna-r.1	106423628	DNA repair protein RAD16
bna-r.1	125577210	DNA repair protein RAD16-like
ghi-r.1	121214653	DNA repair protein RAD16
ghi-r.1	107887153	DNA repair protein RAD16
cit-r.1	102630106	DNA repair protein RAD16
gma-u.5	100798333	DNA repair protein RAD16
gma-u.5	100786366	DNA repair protein RAD16
vvi-u.5	100267049	DNA repair protein RAD16
ppo-u.5	7463406	DNA repair protein RAD16
mtr-u.5	11443944	DNA repair protein RAD16
sly-u.5	101254345	DNA repair protein RAD16-like
sot-r.1	102584572	DNA repair protein RAD16-like
sot-r.1	102586115	ATP-dependent helicase rhp16-like
sot-r.1	102590390	ATP-dependent helicase rhp16-like
nta-r.1	107765031	DNA repair protein RAD16
nta-r.1	107775959	ATP-dependent helicase rhp16-like
osa-u.5	4343361	DNA repair protein RAD16
zma-u.5	103633219	DNA repair protein RAD16
tae-r.2	123044702	DNA repair protein RAD16
tae-r.2	123052565	DNA repair protein RAD16
tae-r.2	123188450	DNA repair protein RAD16
hvu-r.1	123425921	DNA repair protein RAD16
sbi-r.1	8077499	DNA repair protein RAD16
bdi-r.1	100826734	DNA repair protein RAD16
cre-r.1	CHLRE_11g479300v5	uncharacterized protein

Top 50 coexpressed genes to AT1G02670 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G02670 (ath-m.9 coexpression data)

CoexMap"839532"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity	(21 genes)	IEA
GO:0005524 [list] [network] ATP binding	(321 genes)	IEA

Protein

NP_001321902.1 [sequence] [blastp]
NP_001321903.1 [sequence] [blastp]
NP_001321904.1 [sequence] [blastp]
NP_001321905.1 [sequence] [blastp]
NP_001321906.1 [sequence] [blastp]
NP_001321907.1 [sequence] [blastp]
NP_171767.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 3, chlo 2, nucl_plas 2	(predict for NP_001321902.1)
nucl 5, cyto 3, cysk_nucl 3	(predict for NP_001321903.1)
cyto 4, nucl 4, chlo 1	(predict for NP_001321904.1)
nucl 5, chlo 3, cysk_nucl 3	(predict for NP_001321905.1)
cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for NP_001321906.1)
cyto 5, nucl 3, chlo 1, nucl_plas 1	(predict for NP_001321907.1)
cyto 5, nucl 3, chlo 2	(predict for NP_171767.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001321902.1)
other 9	(predict for NP_001321903.1)
other 8	(predict for NP_001321904.1)
other 9	(predict for NP_001321905.1)
other 9	(predict for NP_001321906.1)
other 8	(predict for NP_001321907.1)
other 6	(predict for NP_171767.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G02670	ath-u.5 for AT1G02670	ath-r.7 for AT1G02670	ath-e.2 for AT1G02670	ath-m.4.bio for AT1G02670	ath-m.4.hor for AT1G02670	ath-m.4.lig for AT1G02670	ath-m.4.str for AT1G02670	ath-m.4.tis for AT1G02670	ath-u.5 for AT1G05120	bra-r.6 for 103844170	bra-r.6 for 103836539	bra-r.6 for 103844175	bna-r.1 for 106400558	bna-r.1 for 106423628	bna-r.1 for 125577210	ghi-r.1 for 121214653	ghi-r.1 for 107887153	cit-r.1 for 102630106	gma-u.5 for 100798333	gma-u.5 for 100786366	vvi-u.5 for 100267049	ppo-u.5 for 7463406	mtr-u.5 for 11443944	sly-u.5 for 101254345	sot-r.1 for 102584572	sot-r.1 for 102586115	sot-r.1 for 102590390	nta-r.1 for 107765031	nta-r.1 for 107775959	osa-u.5 for 4343361	zma-u.5 for 103633219	tae-r.2 for 123044702	tae-r.2 for 123052565	tae-r.2 for 123188450	hvu-r.1 for 123425921	sbi-r.1 for 8077499	bdi-r.1 for 100826734	cre-r.1 for CHLRE_11g479300v5

Ortholog

Ortholog ID: 3640

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

Helicase protein with RING/U-box domain-containing protein

DNA repair protein RAD16

ATP-dependent helicase rhp16

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

DNA repair protein RAD16-like

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03460	Fanconi anemia pathway	2
ath03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03040	Spliceosome	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2
nta04820	Cytoskeleton in muscle cells	2
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

Expression

Expression pattern

Entrez Gene ID^*

839532

839319

103844170

103836539

103844175

106400558

106401094

111213864

121214653

107887153

102630106

100798333

100786366

100267049

7463406

11443944

101249085

101251601

102586115

102597176

107765031

142173220

142173222

4343361

103633219

123044702

123052565

123188450

123425921

8077499

100826734

66055334

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	2	1	2	1	1	1	1	3	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G02670 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G02670 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**