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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103844175   ATP-dependent helicase rhp16 
 ath-u.5   AT1G05120   Helicase protein with RING/U-box domain-containing protein 
 ath-u.5   AT1G02670   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100798333   DNA repair protein RAD16 
 gma-u.5   100786366   DNA repair protein RAD16 
 vvi-u.5   100267049   DNA repair protein RAD16 
 ppo-u.5   7463406   DNA repair protein RAD16 
 mtr-u.5   11443944   DNA repair protein RAD16 
 sly-u.5   101251601   ATP-dependent helicase rhp16-like 
 osa-u.5   4343361   DNA repair protein RAD16 
 zma-u.5   103633219   DNA repair protein RAD16 

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Top 50 coexpressed genes to 103844175 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103844175 (bra-r.6 coexpression data)

CoexMap"103844175"


braLOC103844175 | Entrez gene ID : 103844175    
Species bra ath gma vvi ppo mtr sly osa zma hvu bna cit ghi sbi bdi nta tae cre sot
Paralog 1 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (55 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2916 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3068 genes)  IEA  
Protein XP_009119204.1 [sequence] [blastp]
XP_018511113.1 [sequence] [blastp]
XP_033138472.1 [sequence] [blastp]
XP_033138473.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 1,  plas 1,  cyto 1,  mito 1,  pero 1,  cysk 1,  golg 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_009119204.1)
cyto 3,  plas 2,  cyto_nucl 2,  chlo 1,  nucl 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_018511113.1)
nucl 3,  chlo 2,  nucl_plas 2,  plas 1,  chlo_mito 1  (predict for XP_033138472.1)
mito 4,  chlo 2,  nucl 2,  plas 1  (predict for XP_033138473.1)
Subcellular
localization
TargetP
other 7  (predict for XP_009119204.1)
other 7  (predict for XP_018511113.1)
other 7  (predict for XP_033138472.1)
other 9  (predict for XP_033138473.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103844175
ath-u.5
for
AT1G05120
ath-u.5
for
AT1G02670
gma-u.5
for
100798333
gma-u.5
for
100786366
vvi-u.5
for
100267049
ppo-u.5
for
7463406
mtr-u.5
for
11443944
sly-u.5
for
101251601
osa-u.5
for
4343361
zma-u.5
for
103633219


Ortholog ID: 3640
Species bra bra bna bna ath ath ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC103844170 LOC103844175 LOC111213864 LOC106400558 AT1G02670 AT1G05120 LOC107887153 LOC121214653 LOC102630106 LOC100798333 LOC100786366 LOC100267049 LOC7463406 LOC11443944 LOC101251601 LOC102586115 LOC142173220 LOC142173222 LOC4343361 LOC103633219 LOC123052565 LOC123044702 LOC123425921 LOC8077499 LOC100826734 CHLRE_11g479300v5
Function* DNA repair protein RAD16 ATP-dependent helicase rhp16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16 P-loop containing nucleoside triphosphate hydrolases superfamily protein Helicase protein with RING/U-box domain-containing protein DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like ATP-dependent helicase rhp16-like DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 DNA repair protein RAD16 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03460 Fanconi anemia pathway 2
ath03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 4
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03040 Spliceosome 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04814 Motor proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103844170 103844175 111213864 106400558 839532 839319 107887153 121214653 102630106 100798333 100786366 100267049 7463406 11443944 101251601 102586115 142173220 142173222 4343361 103633219 123052565 123044702 123425921 8077499 100826734 66055334
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