ATTED-II : GeneCoexpression result

Species	Gene	Description
tae-r.2	123188450	DNA repair protein RAD16
osa-u.5	4343361	DNA repair protein RAD16
zma-u.5	103633219	DNA repair protein RAD16
ath-u.5	AT1G05120	Helicase protein with RING/U-box domain-containing protein
ath-u.5	AT1G02670	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	100798333	DNA repair protein RAD16
gma-u.5	100786366	DNA repair protein RAD16
sly-u.5	101251601	ATP-dependent helicase rhp16-like
vvi-u.5	100267049	DNA repair protein RAD16
ppo-u.5	7463406	DNA repair protein RAD16
mtr-u.5	11443944	DNA repair protein RAD16

functional annotation

KEGG

GO BP

GO:0006289 [list] [network] nucleotide-excision repair

(126 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(8281 genes)

IEA

GO MF

GO:0008094 [list] [network] ATP-dependent activity, acting on DNA	(380 genes)	IEA
GO:0005524 [list] [network] ATP binding	(7858 genes)	IEA

Protein

XP_044456511.1 [sequence] [blastp]
XP_044456512.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 3, nucl 3, cyto_mito 2, chlo 1, cyto 1, plas 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1, cyto_plas 1	(predict for XP_044456511.1)
nucl 3, mito 2, cyto_mito 1, cysk_nucl 1, chlo 1, plas 1, cyto_nucl 1	(predict for XP_044456512.1)

Subcellular
localization
TargetP

other 6, mito 4	(predict for XP_044456511.1)
other 6, mito 4	(predict for XP_044456512.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 123188450	osa-u.5 for 4343361	zma-u.5 for 103633219	ath-u.5 for AT1G05120	ath-u.5 for AT1G02670	gma-u.5 for 100798333	gma-u.5 for 100786366	sly-u.5 for 101251601	vvi-u.5 for 100267049	ppo-u.5 for 7463406	mtr-u.5 for 11443944

Ortholog ID: 3640

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

DNA repair protein RAD16

P-loop containing nucleoside triphosphate hydrolases superfamily protein

Helicase protein with RING/U-box domain-containing protein

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

ATP-dependent helicase rhp16

ATP-dependent helicase rhp16-like

DNA repair protein RAD16

ATP-dependent helicase rhp16-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03013	Nucleocytoplasmic transport	3
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03460	Fanconi anemia pathway	2
ath03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	4
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma03040	Spliceosome	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2
ghi00564	Glycerophospholipid metabolism	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03083	Polycomb repressive complex	2
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2
cit00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

123052565

123044702

123425921

100826734

4343361

103633219

8077499

839532

839319

100798333

100786366

101251601

103844170

103844175

100267049

7463406

11443944

107887153

121214653

111213864

106400558

102586115

102630106

142173220

142173222

66055334

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123188450 (tae-r.2 coexpression data)

Top 50 enrichment test to 123188450 (tae-r.2 coexpression data)


Species	tae	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre
Paralog	1	1	1	2	2	1	1	1	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123188450 (tae-r.2 coexpression data)

Top 50 enrichment test to 123188450 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**