ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-r.7	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-e.2	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.bio	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.hor	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.lig	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.str	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.tis	AT1G31050	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
bra-r.6	103840273	transcription factor bHLH111
bna-r.1	106352369	transcription factor bHLH111
bna-r.1	106364379	transcription factor bHLH111
ghi-r.1	107909931	transcription factor bHLH111
ghi-r.1	107897758	transcription factor bHLH111
cit-r.1	102610751	transcription factor bHLH111
gma-u.5	100793512	transcription factor bHLH111
gma-u.5	100527800	basic helix-loop-helix (bHLH) DNA-binding protein
vvi-u.5	100240845	transcription factor bHLH111
ppo-u.5	7459079	transcription factor bHLH111
ppo-u.5	7457838	transcription factor bHLH111
mtr-u.5	25484910	transcription factor bHLH111
sly-u.5	101252913	transcription factor bHLH112
sot-r.1	102589772	transcription factor bHLH111
nta-r.1	107772681	uncharacterized LOC107772681
nta-r.1	107790577	transcription factor bHLH111-like
osa-u.5	4343202	uncharacterized LOC4343202
zma-u.5	103647665	transcription factor bHLH111
zma-u.5	103633112	uncharacterized LOC103633112
sbi-r.1	8077274	transcription factor bHLH111
bdi-r.1	100841083	transcription factor bHLH111

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1618 genes)

IEA ISS TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0046983 [list] [network] protein dimerization activity	(446 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	IEA ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001321890.1 [sequence] [blastp]
NP_001321891.1 [sequence] [blastp]
NP_001321892.1 [sequence] [blastp]
NP_001321893.1 [sequence] [blastp]
NP_001321894.1 [sequence] [blastp]
NP_001321895.1 [sequence] [blastp]
NP_001321896.1 [sequence] [blastp]
NP_174391.5 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001321890.1)
nucl 9	(predict for NP_001321891.1)
nucl 6, chlo 1, cyto 1, mito 1, E.R. 1, golg 1, chlo_mito 1, cyto_E.R. 1	(predict for NP_001321892.1)
nucl 6, golg 1, chlo 1, cyto 1, mito 1, E.R. 1, chlo_mito 1, golg_plas 1, cyto_E.R. 1	(predict for NP_001321893.1)
nucl 10	(predict for NP_001321894.1)
nucl 10	(predict for NP_001321895.1)
nucl 9	(predict for NP_001321896.1)
nucl 9	(predict for NP_174391.5)

Subcellular
localization
TargetP

other 7, chlo 5	(predict for NP_001321890.1)
other 7, chlo 5	(predict for NP_001321891.1)
other 7, chlo 5	(predict for NP_001321892.1)
other 7, chlo 5	(predict for NP_001321893.1)
other 7, chlo 5	(predict for NP_001321894.1)
other 7, chlo 5	(predict for NP_001321895.1)
other 7, chlo 5	(predict for NP_001321896.1)
other 7, chlo 5	(predict for NP_174391.5)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G31050	ath-u.5 for AT1G31050	ath-r.7 for AT1G31050	ath-e.2 for AT1G31050	ath-m.4.bio for AT1G31050	ath-m.4.hor for AT1G31050	ath-m.4.lig for AT1G31050	ath-m.4.str for AT1G31050	ath-m.4.tis for AT1G31050	bra-r.6 for 103840273	bna-r.1 for 106352369	bna-r.1 for 106364379	ghi-r.1 for 107909931	ghi-r.1 for 107897758	cit-r.1 for 102610751	gma-u.5 for 100793512	gma-u.5 for 100527800	vvi-u.5 for 100240845	ppo-u.5 for 7459079	ppo-u.5 for 7457838	mtr-u.5 for 25484910	sly-u.5 for 101252913	sot-r.1 for 102589772	nta-r.1 for 107772681	nta-r.1 for 107790577	osa-u.5 for 4343202	zma-u.5 for 103647665	zma-u.5 for 103633112	sbi-r.1 for 8077274	bdi-r.1 for 100841083