ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.9	AT1G71080	RNA polymerase II transcription elongation factor
ath-u.5	AT1G71080	RNA polymerase II transcription elongation factor
ath-r.7	AT1G71080	RNA polymerase II transcription elongation factor
ath-e.2	AT1G71080	RNA polymerase II transcription elongation factor
ath-m.4.bio	AT1G71080	RNA polymerase II transcription elongation factor
ath-m.4.hor	AT1G71080	RNA polymerase II transcription elongation factor
ath-m.4.lig	AT1G71080	RNA polymerase II transcription elongation factor
ath-m.4.str	AT1G71080	RNA polymerase II transcription elongation factor
ath-m.4.tis	AT1G71080	RNA polymerase II transcription elongation factor
ath-u.5	AT5G38050	RNA polymerase II transcription elongation factor
bra-r.6	103831637	ELL-associated factor 1
bna-r.1	106354124	ELL-associated factor 1
bna-r.1	106406181	ELL-associated factor 1
ghi-r.1	107912768	ELL-associated factor 2
ghi-r.1	107953924	protein rtoA
ghi-r.1	107936628	ELL-associated factor 1
cit-r.1	102628877	uncharacterized LOC102628877
cit-r.1	102614066	suppressor protein SRP40
gma-u.5	100796208	uncharacterized LOC100796208
gma-u.5	100787712	ell-associated factor Eaf
vvi-u.5	100243360	ell-associated factor Eaf-like
ppo-u.5	7488390	uncharacterized LOC7488390
ppo-u.5	7487366	uncharacterized LOC7487366
ppo-u.5	7459796	uncharacterized LOC7459796
mtr-u.5	11411164	ell-associated factor Eaf
sly-u.5	101261379	uncharacterized LOC101261379
sot-r.1	102600520	clumping factor B
nta-r.1	107831175	uncharacterized LOC107831175
nta-r.1	107777948	uncharacterized LOC107777948
osa-u.5	4324047	uncharacterized LOC4324047
zma-u.5	100272267	RNA polymerase II transcription elongation factor
zma-u.5	100191143	uncharacterized LOC100191143
tae-r.2	123127377	ell-associated factor Eaf
tae-r.2	123131055	ell-associated factor Eaf
hvu-r.1	123443678	ell-associated factor Eaf-like
sbi-r.1	8062971	ELL-associated factor 1
bdi-r.1	100830930	ell-associated factor Eaf
cre-r.1	CHLRE_03g154200v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006368 [list] [network] transcription elongation by RNA polymerase II

(8 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_565010.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_565010.1)

Subcellular
localization
TargetP

other 8

(predict for NP_565010.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G71080	ath-u.5 for AT1G71080	ath-r.7 for AT1G71080	ath-e.2 for AT1G71080	ath-m.4.bio for AT1G71080	ath-m.4.hor for AT1G71080	ath-m.4.lig for AT1G71080	ath-m.4.str for AT1G71080	ath-m.4.tis for AT1G71080	ath-u.5 for AT5G38050	bra-r.6 for 103831637	bna-r.1 for 106354124	bna-r.1 for 106406181	ghi-r.1 for 107912768	ghi-r.1 for 107953924	ghi-r.1 for 107936628	cit-r.1 for 102628877	cit-r.1 for 102614066	gma-u.5 for 100796208	gma-u.5 for 100787712	vvi-u.5 for 100243360	ppo-u.5 for 7488390	ppo-u.5 for 7487366	ppo-u.5 for 7459796	mtr-u.5 for 11411164	sly-u.5 for 101261379	sot-r.1 for 102600520	nta-r.1 for 107831175	nta-r.1 for 107777948	osa-u.5 for 4324047	zma-u.5 for 100272267	zma-u.5 for 100191143	tae-r.2 for 123127377	tae-r.2 for 123131055	hvu-r.1 for 123443678	sbi-r.1 for 8062971	bdi-r.1 for 100830930	cre-r.1 for CHLRE_03g154200v5

Ortholog

Ortholog ID: 6983

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RNA polymerase II transcription elongation factor

ELL-associated factor 1

ELL-associated factor 2

protein rtoA

ELL-associated factor 1

uncharacterized LOC102628877

suppressor protein SRP40

uncharacterized LOC100796208

ell-associated factor Eaf

ell-associated factor Eaf-like

uncharacterized LOC7488390

uncharacterized LOC7487366

uncharacterized LOC7459796

ell-associated factor Eaf

uncharacterized LOC101261379

clumping factor B

uncharacterized LOC107831175

uncharacterized LOC107777948

uncharacterized LOC4324047

RNA polymerase II transcription elongation factor

uncharacterized LOC100191143

ell-associated factor Eaf

ell-associated factor Eaf-like

ELL-associated factor 1

ell-associated factor Eaf

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	3
cit00190	Oxidative phosphorylation	2
cit00360	Phenylalanine metabolism	2
cit00020	Citrate cycle (TCA cycle)	2
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	5
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

843448

833785

103831637

106354124

106406181

107912768

107953924

107936628

102628877

102614066

100796208

100787712

100243360

7488390

7487366

7459796

11411164

101261379

102600520

107831175

107777948

4324047

100272267

100191143

123127377

123131055

123443678

8062971

100830930

66052722

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G71080 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G71080 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	1	2	3	2	2	1	3	1	1	1	2	1	2	2	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G71080 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G71080 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**