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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106406181   ELL-associated factor 1 
 ath-u.5   AT5G38050   RNA polymerase II transcription elongation factor 
 ath-u.5   AT1G71080   RNA polymerase II transcription elongation factor 
 gma-u.5   100796208   uncharacterized LOC100796208 
 gma-u.5   100787712   ell-associated factor Eaf 
 vvi-u.5   100243360   ell-associated factor Eaf-like 
 ppo-u.5   7459796   uncharacterized LOC7459796 
 ppo-u.5   7487366   uncharacterized LOC7487366 
 ppo-u.5   7488390   uncharacterized LOC7488390 
 mtr-u.5   11411164   ell-associated factor Eaf 
 sly-u.5   101261379   uncharacterized LOC101261379 
 osa-u.5   4324047   uncharacterized LOC4324047 
 zma-u.5   100272267   RNA polymerase II transcription elongation factor 
 zma-u.5   100191143   uncharacterized LOC100191143 

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Top 50 coexpressed genes to 106406181 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106406181 (bna-r.1 coexpression data)

CoexMap"106406181"


bnaLOC106406181 | Entrez gene ID : 106406181    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 2 2 1 3 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034243 [list] [network] regulation of transcription elongation by RNA polymerase II  (95 genes)  IEA  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (935 genes)  IEA  
GO CC
GO:0032783 [list] [network] super elongation complex  (2 genes)  IEA  
GO MF
GO:0003711 [list] [network] transcription elongation factor activity  (2 genes)  IEA  
Protein XP_013702248.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_013702248.1)
Subcellular
localization
TargetP
other 8  (predict for XP_013702248.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106406181

.
ath-u.5
for
AT5G38050

.
ath-u.5
for
AT1G71080

.
gma-u.5
for
100796208

.
gma-u.5
for
100787712

.
vvi-u.5
for
100243360

.
ppo-u.5
for
7459796

.
ppo-u.5
for
7487366

.
ppo-u.5
for
7488390

.
mtr-u.5
for
11411164

.
sly-u.5
for
101261379

.
osa-u.5
for
4324047

.
zma-u.5
for
100272267

.
zma-u.5
for
100191143

.


Ortholog ID: 6983
Species ath ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol AT1G71080 AT5G38050 LOC100787712 LOC100796208 LOC101261379 LOC4324047 LOC100272267 LOC100191143 LOC103831637 LOC100243360 LOC7487366 LOC7488390 LOC11411164 LOC123127377 LOC123131055 LOC123443678 LOC107953924 LOC107912768 LOC106406181 LOC106354124 CHLRE_03g154200v5 LOC8062971 LOC102600520 LOC102628877 LOC102614066 LOC100830930 LOC107831175 LOC107777948
Function* RNA polymerase II transcription elongation factor RNA polymerase II transcription elongation factor ell-associated factor Eaf uncharacterized LOC100796208 uncharacterized LOC101261379 uncharacterized LOC4324047 RNA polymerase II transcription elongation factor uncharacterized LOC100191143 ELL-associated factor 1 ell-associated factor Eaf-like uncharacterized LOC7487366 uncharacterized LOC7488390 ell-associated factor Eaf ell-associated factor Eaf ell-associated factor Eaf ell-associated factor Eaf-like protein rtoA ELL-associated factor 2 ELL-associated factor 1 ELL-associated factor 1 uncharacterized protein ELL-associated factor 1 clumping factor B uncharacterized LOC102628877 suppressor protein SRP40 ell-associated factor Eaf uncharacterized LOC107831175 uncharacterized LOC107777948
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
cit00190 Oxidative phosphorylation 2
cit00360 Phenylalanine metabolism 2
cit00020 Citrate cycle (TCA cycle) 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843448 833785 100787712 100796208 101261379 4324047 100272267 100191143 103831637 100243360 7487366 7488390 11411164 123127377 123131055 123443678 107953924 107912768 106406181 106354124 66052722 8062971 102600520 102628877 102614066 100830930 107831175 107777948
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