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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_03g154200v5   uncharacterized protein 
 ath-u.5   AT5G38050   RNA polymerase II transcription elongation factor 
 ath-u.5   AT1G71080   RNA polymerase II transcription elongation factor 
 gma-u.5   100796208   uncharacterized LOC100796208 
 gma-u.5   100787712   ell-associated factor Eaf 
 sly-u.5   101261379   uncharacterized LOC101261379 
 osa-u.5   4324047   uncharacterized LOC4324047 
 zma-u.5   100272267   RNA polymerase II transcription elongation factor 
 zma-u.5   100191143   uncharacterized LOC100191143 
 bra-r.6   103831637   ELL-associated factor 1 
 vvi-u.5   100243360   ell-associated factor Eaf-like 
 ppo-u.5   7488390   uncharacterized LOC7488390 
 ppo-u.5   7487366   uncharacterized LOC7487366 
 ppo-u.5   7459796   uncharacterized LOC7459796 
 mtr-u.5   11411164   ell-associated factor Eaf 
 tae-r.2   123131055   ell-associated factor Eaf 
 tae-r.2   123127377   ell-associated factor Eaf 
 hvu-r.1   123443678   ell-associated factor Eaf-like 
 ghi-r.1   107912904   ELL-associated factor 2 
 ghi-r.1   107953924   protein rtoA 
 ghi-r.1   107912768   ELL-associated factor 2 
 bna-r.1   106354124   ELL-associated factor 1 
 bna-r.1   106406181   ELL-associated factor 1 
 sbi-r.1   8062971   ELL-associated factor 1 
 sot-r.1   102600520   clumping factor B 
 cit-r.1   102614066   suppressor protein SRP40 
 cit-r.1   102628877   uncharacterized LOC102628877 
 bdi-r.1   100830930   ell-associated factor Eaf 
 nta-r.1   107831175   uncharacterized LOC107831175 
 nta-r.1   107777948   uncharacterized LOC107777948 

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Top 50 coexpressed genes to CHLRE_03g154200v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_03g154200v5 (cre-r.1 coexpression data)

CoexMap"66052722"


creCHLRE_03g154200v5 | Entrez gene ID : 66052722    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 2 1 1 3 1 2 1 3 2 1 1 2 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0034243 [list] [network] regulation of transcription elongation by RNA polymerase II  (9 genes)  IEA  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (72 genes)  IEA  
GO CC
GO:0032783 [list] [network] super elongation complex  (1 genes)  IEA  
GO MF
GO:0003711 [list] [network] transcription elongation factor activity  (1 genes)  IEA  
Protein XP_042925694.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_042925694.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042925694.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_03g154200v5
ath-u.5
for
AT5G38050
ath-u.5
for
AT1G71080
gma-u.5
for
100796208
gma-u.5
for
100787712
sly-u.5
for
101261379
osa-u.5
for
4324047
zma-u.5
for
100272267
zma-u.5
for
100191143
bra-r.6
for
103831637
vvi-u.5
for
100243360
ppo-u.5
for
7488390
ppo-u.5
for
7487366
ppo-u.5
for
7459796
mtr-u.5
for
11411164
tae-r.2
for
123131055
tae-r.2
for
123127377
hvu-r.1
for
123443678
ghi-r.1
for
107912904
ghi-r.1
for
107953924
ghi-r.1
for
107912768
bna-r.1
for
106354124
bna-r.1
for
106406181
sbi-r.1
for
8062971
sot-r.1
for
102600520
cit-r.1
for
102614066
cit-r.1
for
102628877
bdi-r.1
for
100830930
nta-r.1
for
107831175
nta-r.1
for
107777948


Ortholog ID: 6983
Species cre ath ath gma gma sly osa zma zma bra vvi ppo ppo ppo mtr tae tae hvu ghi ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol CHLRE_03g154200v5 AT5G38050 AT1G71080 LOC100796208 LOC100787712 LOC101261379 LOC4324047 LOC100272267 LOC100191143 LOC103831637 LOC100243360 LOC7488390 LOC7487366 LOC7459796 LOC11411164 LOC123131055 LOC123127377 LOC123443678 LOC107953924 LOC107912768 LOC107936628 LOC106354124 LOC106406181 LOC8062971 LOC102600520 LOC102614066 LOC102628877 LOC100830930 LOC107831175 LOC107777948
Function* uncharacterized protein RNA polymerase II transcription elongation factor RNA polymerase II transcription elongation factor uncharacterized LOC100796208 ell-associated factor Eaf uncharacterized LOC101261379 uncharacterized LOC4324047 RNA polymerase II transcription elongation factor uncharacterized LOC100191143 ELL-associated factor 1 ell-associated factor Eaf-like uncharacterized LOC7488390 uncharacterized LOC7487366 uncharacterized LOC7459796 ell-associated factor Eaf ell-associated factor Eaf ell-associated factor Eaf ell-associated factor Eaf-like protein rtoA ELL-associated factor 2 ELL-associated factor 1 ELL-associated factor 1 ELL-associated factor 1 ELL-associated factor 1 clumping factor B suppressor protein SRP40 uncharacterized LOC102628877 ell-associated factor Eaf uncharacterized LOC107831175 uncharacterized LOC107777948
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 3
cit00190 Oxidative phosphorylation 2
cit00360 Phenylalanine metabolism 2
cit00020 Citrate cycle (TCA cycle) 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 66052722 833785 843448 100796208 100787712 101261379 4324047 100272267 100191143 103831637 100243360 7488390 7487366 7459796 11411164 123131055 123127377 123443678 107953924 107912768 107936628 106354124 106406181 8062971 102600520 102614066 102628877 100830930 107831175 107777948
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