ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	ATL8	RING/U-box superfamily protein
ath-u.5	ATL8	RING/U-box superfamily protein
ath-r.7	ATL8	RING/U-box superfamily protein
ath-e.2	ATL8	RING/U-box superfamily protein
ath-m.4.bio	ATL8	RING/U-box superfamily protein
ath-m.4.hor	ATL8	RING/U-box superfamily protein
ath-m.4.lig	ATL8	RING/U-box superfamily protein
ath-m.4.str	ATL8	RING/U-box superfamily protein
ath-m.4.tis	ATL8	RING/U-box superfamily protein
ath-u.5	RHA3A	RING-H2 finger A3A
ath-u.5	RHA3B	RING-H2 finger A3B
ath-u.5	AT1G20823	RING/U-box superfamily protein
bra-r.6	103874124	probable E3 ubiquitin-protein ligase ATL44
bra-r.6	103853025	RING-H2 finger protein ATL8
bna-r.1	106394440	probable E3 ubiquitin-protein ligase ATL44
bna-r.1	106361280	probable E3 ubiquitin-protein ligase ATL45
ghi-r.1	107917879	RING-H2 finger protein ATL80
ghi-r.1	107922003	RING-H2 finger protein ATL80
cit-r.1	102610566	RING-H2 finger protein ATL80
gma-u.5	100813341	RING-H2 finger protein ATL8
gma-u.5	100786769	RING-H2 finger protein ATL8
gma-u.5	100787383	RING-H2 finger protein ATL8
vvi-u.5	100260977	RING-H2 finger protein ATL80
vvi-u.5	100266753	RING-H2 finger protein ATL8
ppo-u.5	7485656	RING-H2 finger protein ATL8
ppo-u.5	7471753	RING-H2 finger protein ATL8
mtr-u.5	11428288	RING-H2 finger protein ATL8
mtr-u.5	11411600	RING-H2 finger protein ATL80
mtr-u.5	11405802	RING-H2 finger protein ATL8
sly-u.5	101254466	RING-H2 finger protein ATL80
sly-u.5	101264584	RING-H2 finger protein ATL8-like
sly-u.5	101265820	RING-H2 finger protein ATL80
sot-r.1	102600767	RING-H2 finger protein ATL8-like
sot-r.1	102579592	RING-H2 finger protein ATL80
nta-r.1	107828572	RING-H2 finger protein ATL80
nta-r.1	107820728	RING-H2 finger protein ATL80-like
nta-r.1	107807258	RING-H2 finger protein ATL8
osa-u.5	9266473	RING-H2 finger protein ATL80
osa-u.5	4330352	RING-H2 finger protein ATL80
osa-u.5	4336787	probable E3 ubiquitin-protein ligase ATL44
zma-u.5	100284205	uncharacterized LOC100284205
zma-u.5	100283712	RING-H2 finger protein ATL1R
zma-u.5	100280547	RING-H2 finger protein ATL2A
tae-r.2	123130802	RING-H2 finger protein ATL8
hvu-r.1	123413267	probable E3 ubiquitin-protein ligase ATL44
hvu-r.1	123402337	RING-H2 finger protein ATL80-like
sbi-r.1	8066387	probable E3 ubiquitin-protein ligase ATL45
sbi-r.1	8060446	RING-H2 finger protein ATL74
sbi-r.1	8066454	probable E3 ubiquitin-protein ligase ATL44
bdi-r.1	100822098	probable E3 ubiquitin-protein ligase ATL44
bdi-r.1	100830458	RING-H2 finger protein ATL8

Top 50 coexpressed genes to ATL8 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to ATL8 (ath-m.9 coexpression data)

CoexMap"843974"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_177767.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, extr 1, E.R. 1

(predict for NP_177767.1)

Subcellular
localization
TargetP

other 5

(predict for NP_177767.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for ATL8	ath-u.5 for ATL8	ath-r.7 for ATL8	ath-e.2 for ATL8	ath-m.4.bio for ATL8	ath-m.4.hor for ATL8	ath-m.4.lig for ATL8	ath-m.4.str for ATL8	ath-m.4.tis for ATL8	ath-u.5 for RHA3A	ath-u.5 for RHA3B	ath-u.5 for AT1G20823	bra-r.6 for 103874124	bra-r.6 for 103853025	bna-r.1 for 106394440	bna-r.1 for 106361280	ghi-r.1 for 107917879	ghi-r.1 for 107922003	cit-r.1 for 102610566	gma-u.5 for 100813341	gma-u.5 for 100786769	gma-u.5 for 100787383	vvi-u.5 for 100260977	vvi-u.5 for 100266753	ppo-u.5 for 7485656	ppo-u.5 for 7471753	mtr-u.5 for 11428288	mtr-u.5 for 11411600	mtr-u.5 for 11405802	sly-u.5 for 101254466	sly-u.5 for 101264584	sly-u.5 for 101265820	sot-r.1 for 102600767	sot-r.1 for 102579592	nta-r.1 for 107828572	nta-r.1 for 107820728	nta-r.1 for 107807258	osa-u.5 for 9266473	osa-u.5 for 4330352	osa-u.5 for 4336787	zma-u.5 for 100284205	zma-u.5 for 100283712	zma-u.5 for 100280547	tae-r.2 for 123130802	hvu-r.1 for 123413267	hvu-r.1 for 123402337	sbi-r.1 for 8066387	sbi-r.1 for 8060446	sbi-r.1 for 8066454	bdi-r.1 for 100822098	bdi-r.1 for 100830458

Ortholog

Ortholog ID: 374

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

RHA3A

RHA3B

Function^*

RING-H2 finger A3A

RING-H2 finger A3B

RING/U-box superfamily protein

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL8

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL80-like

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8-like

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80-like

RING-H2 finger protein ATL80

probable E3 ubiquitin-protein ligase ATL44

uncharacterized LOC100284205

RING-H2 finger protein ATL1R

RING-H2 finger protein ATL74

RING-H2 finger protein ATL8

RING-H2 finger protein ATL74

probable E3 ubiquitin-protein ligase ATL44

probable E3 ubiquitin-protein ligase ATL45

RING-H2 finger protein ATL74

probable E3 ubiquitin-protein ligase ATL44

RING-H2 finger protein ATL80

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00250	Alanine, aspartate and glutamate metabolism	4
gma01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	2
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03060	Protein export	2
nta03082	ATP-dependent chromatin remodeling	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00905	Brassinosteroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04016	MAPK signaling pathway - plant	4
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

816251

829700

838674

103874124

103832100

103845949

111210253

106421305

107917879

107922003

102610566

100813341

100786769

100789620

100260977

100266753

7471753

7492116

11428288

11411600

11405802

101254466

101265820

101248283

102600767

102579592

107828572

107807258

107765274

9266473

4330352

4336787

100284205

100283712

103641925

123141655

123042069

123451912

123451909

8066387

8060446

8066454

100822098

100829815

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	2	2	2	1	3	2	2	3	3	2	3	3	3	1	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ATL8 (ath-m.9 coexpression data)

Top 50 enrichment test to ATL8 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**