ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	107820728	RING-H2 finger protein ATL80-like
nta-r.1	107828099	RING-H2 finger protein ATL80-like
nta-r.1	107828572	RING-H2 finger protein ATL80
nta-r.1	107807258	RING-H2 finger protein ATL8
sly-u.5	101254466	RING-H2 finger protein ATL80
sly-u.5	101262287	RING-H2 finger protein ATL8
sly-u.5	101264584	RING-H2 finger protein ATL8-like
sot-r.1	102579592	RING-H2 finger protein ATL80
sot-r.1	102600767	RING-H2 finger protein ATL8-like
ath-u.5	RHA3A	RING-H2 finger A3A
ath-u.5	RHA3B	RING-H2 finger A3B
ath-u.5	AT1G20823	RING/U-box superfamily protein
gma-u.5	100786769	RING-H2 finger protein ATL8
gma-u.5	100787383	RING-H2 finger protein ATL8
gma-u.5	100789620	RING-H2 finger protein ATL8
bra-r.6	103853025	RING-H2 finger protein ATL8
bra-r.6	103874124	probable E3 ubiquitin-protein ligase ATL44
vvi-u.5	100260977	RING-H2 finger protein ATL80
vvi-u.5	100266753	RING-H2 finger protein ATL8
ppo-u.5	7485656	RING-H2 finger protein ATL8
ppo-u.5	7471753	RING-H2 finger protein ATL8
mtr-u.5	11428288	RING-H2 finger protein ATL8
mtr-u.5	11405802	RING-H2 finger protein ATL8
mtr-u.5	11411600	RING-H2 finger protein ATL80
ghi-r.1	107922003	RING-H2 finger protein ATL80
ghi-r.1	107917879	RING-H2 finger protein ATL80
bna-r.1	106361280	probable E3 ubiquitin-protein ligase ATL45
bna-r.1	106358211	RING-H2 finger protein ATL80-like
cit-r.1	102610566	RING-H2 finger protein ATL80
osa-u.5	9266473	RING-H2 finger protein ATL80
osa-u.5	4330352	RING-H2 finger protein ATL80
osa-u.5	4336787	probable E3 ubiquitin-protein ligase ATL44
zma-u.5	100192077	putative RING zinc finger domain superfamily protein
zma-u.5	100284205	uncharacterized LOC100284205
zma-u.5	100283712	RING-H2 finger protein ATL1R
tae-r.2	123130802	RING-H2 finger protein ATL8
hvu-r.1	123402337	RING-H2 finger protein ATL80-like
sbi-r.1	8060446	RING-H2 finger protein ATL74
sbi-r.1	8066387	probable E3 ubiquitin-protein ligase ATL45
sbi-r.1	8066454	probable E3 ubiquitin-protein ligase ATL44
bdi-r.1	100845743	probable E3 ubiquitin-protein ligase ATL44
bdi-r.1	100830458	RING-H2 finger protein ATL8

Top 50 coexpressed genes to 107820728 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107820728 (nta-r.1 coexpression data)

CoexMap"107820728"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_016502552.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, E.R. 4, mito 1, plas 1, vacu 1, mito_plas 1

(predict for XP_016502552.2)

Subcellular
localization
TargetP

other 8, chlo 6

(predict for XP_016502552.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 107820728	nta-r.1 for 107828099	nta-r.1 for 107828572	nta-r.1 for 107807258	sly-u.5 for 101254466	sly-u.5 for 101262287	sly-u.5 for 101264584	sot-r.1 for 102579592	sot-r.1 for 102600767	ath-u.5 for RHA3A	ath-u.5 for RHA3B	ath-u.5 for AT1G20823	gma-u.5 for 100786769	gma-u.5 for 100787383	gma-u.5 for 100789620	bra-r.6 for 103853025	bra-r.6 for 103874124	vvi-u.5 for 100260977	vvi-u.5 for 100266753	ppo-u.5 for 7485656	ppo-u.5 for 7471753	mtr-u.5 for 11428288	mtr-u.5 for 11405802	mtr-u.5 for 11411600	ghi-r.1 for 107922003	ghi-r.1 for 107917879	bna-r.1 for 106361280	bna-r.1 for 106358211	cit-r.1 for 102610566	osa-u.5 for 9266473	osa-u.5 for 4330352	osa-u.5 for 4336787	zma-u.5 for 100192077	zma-u.5 for 100284205	zma-u.5 for 100283712	tae-r.2 for 123130802	hvu-r.1 for 123402337	sbi-r.1 for 8060446	sbi-r.1 for 8066387	sbi-r.1 for 8066454	bdi-r.1 for 100845743	bdi-r.1 for 100830458

Ortholog

Ortholog ID: 374

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

RHA3A

RHA3B

Function^*

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8

RING-H2 finger protein ATL80-like

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8-like

RING-H2 finger protein ATL80

RING-H2 finger protein ATL8-like

RING-H2 finger A3A

RING-H2 finger A3B

RING/U-box superfamily protein

RING-H2 finger protein ATL8