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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RECA1   recA DNA recombination family protein 
 ath-u.5   RECA1   recA DNA recombination family protein 
 ath-r.7   RECA1   recA DNA recombination family protein 
 ath-e.2   RECA1   recA DNA recombination family protein 
 ath-m.4.bio   RECA1   recA DNA recombination family protein 
 ath-m.4.hor   RECA1   recA DNA recombination family protein 
 ath-m.4.lig   RECA1   recA DNA recombination family protein 
 ath-m.4.str   RECA1   recA DNA recombination family protein 
 ath-m.4.tis   RECA1   recA DNA recombination family protein 
 bra-r.6   103830499   DNA repair protein recA homolog 1, chloroplastic 
 bra-r.6   103853162   DNA repair protein recA homolog 1, chloroplastic 
 bna-r.1   106405790   DNA repair protein recA homolog 1, chloroplastic-like 
 bna-r.1   106381533   DNA repair protein recA homolog 1, chloroplastic 
 bna-r.1   106381457   DNA repair protein recA homolog 1, chloroplastic-like 
 ghi-r.1   121213739   DNA repair protein recA homolog 1, chloroplastic 
 ghi-r.1   121203737   DNA repair protein recA homolog 1, chloroplastic 
 cit-r.1   102626696   DNA repair protein recA homolog 1, chloroplastic 
 gma-u.5   100788534   DNA repair protein recA homolog 1, chloroplastic 
 vvi-u.5   100249133   DNA repair protein recA homolog 1, chloroplastic 
 ppo-u.5   18095763   DNA repair protein recA homolog 1, chloroplastic 
 mtr-u.5   25502471   DNA repair protein recA homolog 1, chloroplastic 
 sly-u.5   101261637   DNA repair protein recA homolog 1, chloroplastic 
 sot-r.1   102585921   DNA repair protein recA homolog 1, chloroplastic 
 nta-r.1   107816977   DNA repair protein recA homolog 1, chloroplastic 
 nta-r.1   107810192   DNA repair protein recA homolog 1, chloroplastic 
 osa-u.5   4333537   DNA repair protein recA homolog 1, chloroplastic 
 zma-u.5   100282426   protein recA 
 tae-r.2   123104926   DNA repair protein recA homolog 1, chloroplastic 
 tae-r.2   123113227   DNA repair protein recA homolog 1, chloroplastic 
 tae-r.2   123122736   DNA repair protein recA homolog 1, chloroplastic 
 hvu-r.1   123452124   DNA repair protein recA homolog 1, chloroplastic 
 sbi-r.1   8062225   DNA repair protein recA homolog 1, chloroplastic 
 bdi-r.1   100841100   DNA repair protein recA homolog 1, chloroplastic 
 cre-r.1   CHLRE_07g314650v5   uncharacterized protein 

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Top 50 coexpressed genes to RECA1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RECA1 (ath-m.9 coexpression data)

CoexMap"844246"


athRECA1 | Entrez gene ID : 844246      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0006281 [list] [network] DNA repair  (203 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (9 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (205 genes)  IEA  
Protein NP_001077844.1 [sequence] [blastp]
NP_565198.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1,  extr 1  (predict for NP_001077844.1)
chlo 10  (predict for NP_565198.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001077844.1)
chlo 8  (predict for NP_565198.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RECA1
ath-u.5
for
RECA1
ath-r.7
for
RECA1
ath-e.2
for
RECA1
ath-m.4.bio
for
RECA1
ath-m.4.hor
for
RECA1
ath-m.4.lig
for
RECA1
ath-m.4.str
for
RECA1
ath-m.4.tis
for
RECA1
bra-r.6
for
103830499
bra-r.6
for
103853162
bna-r.1
for
106405790
bna-r.1
for
106381533
bna-r.1
for
106381457
ghi-r.1
for
121213739
ghi-r.1
for
121203737
cit-r.1
for
102626696
gma-u.5
for
100788534
vvi-u.5
for
100249133
ppo-u.5
for
18095763
mtr-u.5
for
25502471
sly-u.5
for
101261637
sot-r.1
for
102585921
nta-r.1
for
107816977
nta-r.1
for
107810192
osa-u.5
for
4333537
zma-u.5
for
100282426
tae-r.2
for
123104926
tae-r.2
for
123113227
tae-r.2
for
123122736
hvu-r.1
for
123452124
sbi-r.1
for
8062225
bdi-r.1
for
100841100
cre-r.1
for
CHLRE_07g314650v5


Ortholog ID: 8316
Species ath bra bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RECA1 LOC103830499 LOC103853162 LOC106381457 LOC125597331 LOC106353418 LOC121213739 LOC121203737 LOC102626696 LOC100788534 LOC100249133 LOC18095763 LOC25502471 LOC101261637 LOC102585921 LOC107816977 LOC107810192 LOC4333537 LOC100282426 LOC123104926 LOC123113227 LOC123122736 LOC123452124 LOC8062225 LOC100841100 CHLRE_07g314650v5
Function* recA DNA recombination family protein DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic-like DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic protein recA DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic DNA repair protein recA homolog 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
ath03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00900 Terpenoid backbone biosynthesis 2
ppo00230 Purine metabolism 2
ppo01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 9
osa00300 Lysine biosynthesis 5
osa00261 Monobactam biosynthesis 2
osa00470 D-Amino acid metabolism 2
osa01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 8
tae03440 Homologous recombination 3
tae00010 Glycolysis / Gluconeogenesis 3
tae00620 Pyruvate metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu01210 2-Oxocarboxylic acid metabolism 2
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00061 Fatty acid biosynthesis 2
sbi00780 Biotin metabolism 2
sbi01212 Fatty acid metabolism 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844246 103830499 103853162 106381457 125597331 106353418 121213739 121203737 102626696 100788534 100249133 18095763 25502471 101261637 102585921 107816977 107810192 4333537 100282426 123104926 123113227 123122736 123452124 8062225 100841100 5726340
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