ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-r.4	18104497	uncharacterized LOC18104497
ppo-u.5	18104497	uncharacterized LOC18104497
ppo-u.5	7467445	uncharacterized LOC7467445
gma-u.5	100798912	NHP2-like protein 1
gma-u.5	100527424	uncharacterized LOC100527424
gma-u.5	100305817	uncharacterized LOC100305817
mtr-u.5	11441647	NHP2-like protein 1
mtr-u.5	25479574	NHP2-like protein 1
ath-u.5	AT4G22380	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
ath-u.5	AT5G20160	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
bra-r.6	103860007	NHP2-like protein 1
bra-r.6	103868150	NHP2-like protein 1
vvi-u.5	100241010	uncharacterized LOC100241010
vvi-u.5	100252442	uncharacterized LOC100252442
ghi-r.1	107901289	NHP2-like protein 1
ghi-r.1	121219998	NHP2-like protein 1
ghi-r.1	107909217	NHP2-like protein 1
bna-r.1	106436275	NHP2-like protein 1
bna-r.1	106437622	NHP2-like protein 1
cit-r.1	102625613	13 kDa ribonucleoprotein-associated protein
sly-u.5	101244799	uncharacterized LOC101244799
sly-u.5	101267649	uncharacterized LOC101267649
sot-r.1	102583911	NHP2-like protein 1
sot-r.1	102588744	NHP2-like protein 1
nta-r.1	107821552	uncharacterized LOC107821552
nta-r.1	107801239	uncharacterized LOC107801239
nta-r.1	107788355	uncharacterized LOC107788355
osa-u.5	4332209	uncharacterized LOC4332209
osa-u.5	4348007	uncharacterized LOC4348007
zma-u.5	100303837	NHP2-like protein 1
zma-u.5	100282785	uncharacterized LOC100282785
zma-u.5	103633413	uncharacterized LOC103633413
tae-r.2	123092812	NHP2-like protein 1
tae-r.2	123085205	NHP2-like protein 1
tae-r.2	123098104	NHP2-like protein 1
hvu-r.1	123449187	NHP2-like protein 1
sbi-r.1	8078864	NHP2-like protein 1
sbi-r.1	8085664	NHP2-like protein 1
bdi-r.1	100844088	NHP2-like protein 1
bdi-r.1	100824839	NHP2-like protein 1
cre-r.1	CHLRE_06g249250v5	uncharacterized protein

Top 50 coexpressed genes to 18104497 (ppo-r.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18104497 (ppo-r.4 coexpression data)

CoexMap"18104497"

[Cytoscape]

Annotation

functional annotation

KEGG

pop03008 [list] [network] Ribosome biogenesis in eukaryotes (334 genes)

pop03040 [list] [network] Spliceosome (338 genes)

GO BP

GO:0030490 [list] [network] maturation of SSU-rRNA	(60 genes)	IEA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(213 genes)	IEA
GO:0042254 [list] [network] ribosome biogenesis	(342 genes)	IEA

GO CC

GO:0031428 [list] [network] box C/D methylation guide snoRNP complex	(9 genes)	IEA
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex	(31 genes)	IEA
GO:0032040 [list] [network] small-subunit processome	(53 genes)	IEA
GO:0071011 [list] [network] precatalytic spliceosome	(56 genes)	IEA
GO:0005730 [list] [network] nucleolus	(220 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1480 genes)

IEA

Protein

XP_006376334.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 1, pero 1, nucl 1, cysk_nucl 1

(predict for XP_006376334.1)

Subcellular
localization
TargetP

other 7

(predict for XP_006376334.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-r.4 for 18104497	ppo-u.5 for 18104497	ppo-u.5 for 7467445	gma-u.5 for 100798912	gma-u.5 for 100527424	gma-u.5 for 100305817	mtr-u.5 for 11441647	mtr-u.5 for 25479574	ath-u.5 for AT4G22380	ath-u.5 for AT5G20160	bra-r.6 for 103860007	bra-r.6 for 103868150	vvi-u.5 for 100241010	vvi-u.5 for 100252442	ghi-r.1 for 107901289	ghi-r.1 for 121219998	ghi-r.1 for 107909217	bna-r.1 for 106436275	bna-r.1 for 106437622	cit-r.1 for 102625613	sly-u.5 for 101244799	sly-u.5 for 101267649	sot-r.1 for 102583911	sot-r.1 for 102588744	nta-r.1 for 107821552	nta-r.1 for 107801239	nta-r.1 for 107788355	osa-u.5 for 4332209	osa-u.5 for 4348007	zma-u.5 for 100303837	zma-u.5 for 100282785	zma-u.5 for 103633413	tae-r.2 for 123092812	tae-r.2 for 123085205	tae-r.2 for 123098104	hvu-r.1 for 123449187	sbi-r.1 for 8078864	sbi-r.1 for 8085664	bdi-r.1 for 100844088	bdi-r.1 for 100824839	cre-r.1 for CHLRE_06g249250v5

Ortholog

Ortholog ID: 3027

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC18104497

uncharacterized LOC7467445

NHP2-like protein 1

uncharacterized LOC100527424

uncharacterized LOC100305817

NHP2-like protein 1

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

NHP2-like protein 1

uncharacterized LOC100241010

uncharacterized LOC100252442

NHP2-like protein 1

13 kDa ribonucleoprotein-associated protein

uncharacterized LOC101244799

uncharacterized LOC101267649

NHP2-like protein 1

uncharacterized LOC107801239

uncharacterized LOC107788355

uncharacterized LOC107829442

uncharacterized LOC4332209

uncharacterized LOC4348007

NHP2-like protein 1

uncharacterized LOC100282785

uncharacterized LOC103633413

NHP2-like protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	16
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	9
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	10
gma03008	Ribosome biogenesis in eukaryotes	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14
gma03008	Ribosome biogenesis in eukaryotes	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14
gma03008	Ribosome biogenesis in eukaryotes	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	15
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7
ath03010	Ribosome	4
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5
ath03010	Ribosome	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	10
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	11
bra03040	Spliceosome	3
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	14
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4
ghi03010	Ribosome	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4
ghi03010	Ribosome	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03040	Spliceosome	4
ghi03010	Ribosome	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	10
bna03008	Ribosome biogenesis in eukaryotes	8
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	12
bna03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit03083	Polycomb repressive complex	2
cit04120	Ubiquitin mediated proteolysis	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	5
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03008	Ribosome biogenesis in eukaryotes	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	16
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13
zma03008	Ribosome biogenesis in eukaryotes	3
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18
zma03008	Ribosome biogenesis in eukaryotes	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03008	Ribosome biogenesis in eukaryotes	3
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03008	Ribosome biogenesis in eukaryotes	4
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03008	Ribosome biogenesis in eukaryotes	3
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	6
hvu03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	15
sbi04120	Ubiquitin mediated proteolysis	3
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	12
sbi04120	Ubiquitin mediated proteolysis	3
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03040	Spliceosome	2
sbi00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	8
bdi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	19

Expression

Expression pattern

Entrez Gene ID^*

18104497

7467445

100798912

100527424

100305817

11441647

25479574

828333

832138

103860007

103839875

100241010

100252442

107901289

107909217

107962625

106381595

106381583

102625613

101244799

101267649

102583911

102588744

107801239

107788355

107829442

4332209

4348007

100303837

100282785

103633413

123092812

123085205

123098104

123449187

8078864

8085664

100844088

100824839

66053519

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	2	2	2	2	3	2	1	2	2	3	2	3	3	1	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18104497 (ppo-r.4 coexpression data)

Top 50 enrichment test to 18104497 (ppo-r.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**