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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107901289   NHP2-like protein 1 
 ath-u.5   AT4G22380   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 
 ath-u.5   AT5G20160   Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 
 gma-u.5   100817627   NHP2-like protein 1 
 gma-u.5   100798912   NHP2-like protein 1 
 gma-u.5   100527424   uncharacterized LOC100527424 
 vvi-u.5   100252442   uncharacterized LOC100252442 
 vvi-u.5   100241010   uncharacterized LOC100241010 
 ppo-u.5   18104497   uncharacterized LOC18104497 
 ppo-u.5   7467445   uncharacterized LOC7467445 
 mtr-u.5   25479574   NHP2-like protein 1 
 mtr-u.5   11441647   NHP2-like protein 1 
 sly-u.5   101244799   uncharacterized LOC101244799 
 sly-u.5   101267649   uncharacterized LOC101267649 
 osa-u.5   4332209   uncharacterized LOC4332209 
 osa-u.5   4348007   uncharacterized LOC4348007 
 zma-u.5   100282785   uncharacterized LOC100282785 
 zma-u.5   100303837   NHP2-like protein 1 
 zma-u.5   103633413   uncharacterized LOC103633413 

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Top 50 coexpressed genes to 107901289 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107901289 (ghi-r.1 coexpression data)

CoexMap"107901289"


ghiLOC107901289 | Entrez gene ID : 107901289    
Species ghi ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna
Paralog 1 2 3 2 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03008 [list] [network] Ribosome biogenesis in eukaryotes (1571 genes)
ghi03040 [list] [network] Spliceosome (739 genes)
GO BP
GO:0000470 [list] [network] maturation of LSU-rRNA  (98 genes)  IEA  
GO:0030490 [list] [network] maturation of SSU-rRNA  (115 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (384 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (752 genes)  IEA  
GO CC
GO:0031428 [list] [network] box C/D methylation guide snoRNP complex  (19 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (61 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (86 genes)  IEA  
GO:0032040 [list] [network] small-subunit processome  (101 genes)  IEA  
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (467 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (469 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_016682713.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_016682713.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016682713.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107901289

.
ath-u.5
for
AT4G22380

.
ath-u.5
for
AT5G20160

.
gma-u.5
for
100817627

.
gma-u.5
for
100798912

.
gma-u.5
for
100527424

.
vvi-u.5
for
100252442

.
vvi-u.5
for
100241010

.
ppo-u.5
for
18104497

.
ppo-u.5
for
7467445

.
mtr-u.5
for
25479574

.
mtr-u.5
for
11441647

.
sly-u.5
for
101244799

.
sly-u.5
for
101267649

.
osa-u.5
for
4332209

.
osa-u.5
for
4348007

.
zma-u.5
for
100282785

.
zma-u.5
for
100303837

.
zma-u.5
for
103633413

.


Ortholog ID: 3027
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT5G20160 AT4G22380 LOC100527424 LOC100305817 LOC101244799 LOC101267649 LOC4348007 LOC4332209 LOC103633413 LOC100282785 LOC103860007 LOC100252442 LOC100241010 LOC18104497 LOC7467445 LOC25479574 LOC11441647 LOC123092812 LOC123085205 LOC123449187 LOC107962625 LOC107909217 LOC106381583 CHLRE_06g249250v5 LOC8078864 LOC8085664 LOC102588744 LOC102583911 LOC102625613 LOC100824839 LOC100844088 LOC107788355 LOC107801239
Function* Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein uncharacterized LOC100527424 uncharacterized LOC100305817 uncharacterized LOC101244799 uncharacterized LOC101267649 uncharacterized LOC4348007 uncharacterized LOC4332209 uncharacterized LOC103633413 uncharacterized LOC100282785 NHP2-like protein 1 uncharacterized LOC100252442 uncharacterized LOC100241010 uncharacterized LOC18104497 uncharacterized LOC7467445 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 uncharacterized protein NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 NHP2-like protein 1 13 kDa ribonucleoprotein-associated protein NHP2-like protein 1 NHP2-like protein 1 uncharacterized LOC107788355 uncharacterized LOC107801239
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03010 Ribosome 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03010 Ribosome 4
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03008 Ribosome biogenesis in eukaryotes 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03010 Ribosome 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03010 Ribosome 5
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
zma03008 Ribosome biogenesis in eukaryotes 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 13
zma03008 Ribosome biogenesis in eukaryotes 3
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 10
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03010 Ribosome 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03040 Spliceosome 4
ghi03010 Ribosome 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 12
bna03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
sbi04120 Ubiquitin mediated proteolysis 3
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 12
sbi04120 Ubiquitin mediated proteolysis 3
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03040 Spliceosome 2
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832138 828333 100527424 100305817 101244799 101267649 4348007 4332209 103633413 100282785 103860007 100252442 100241010 18104497 7467445 25479574 11441647 123092812 123085205 123449187 107962625 107909217 106381583 66053519 8078864 8085664 102588744 102583911 102625613 100824839 100844088 107788355 107801239
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