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Orthologous genes in OrthoFinder**

Species Gene Description
 tae-r.2   123077249   RAP domain-containing protein, chloroplastic 
 tae-r.2   123060241   RAP domain-containing protein, chloroplastic 
 tae-r.2   123068747   RAP domain-containing protein, chloroplastic 
 hvu-r.1   123442779   RAP domain-containing protein, chloroplastic 
 bdi-r.1   100844423   RAP domain-containing protein, chloroplastic 
 osa-u.5   AL1   Albino Leaf1 
 zma-u.5   103649620   RAP 
 sbi-r.1   8082831   RAP domain-containing protein, chloroplastic 
 ath-u.5   RAP   RAP 
 gma-u.5   100805208   RAP domain-containing protein, chloroplastic 
 gma-u.5   100794144   RAP domain-containing protein, chloroplastic 
 sly-u.5   101258337   RAP domain-containing protein, chloroplastic 
 vvi-u.5   100257808   RAP domain-containing protein, chloroplastic 
 ppo-u.5   18106372   RAP domain-containing protein, chloroplastic 
 mtr-u.5   25502299   RAP domain-containing protein, chloroplastic 
 ghi-r.1   107962352   RAP domain-containing protein, chloroplastic 
 ghi-r.1   107928108   RAP domain-containing protein, chloroplastic 
 bna-r.1   106387987   RAP domain-containing protein, chloroplastic 
 bna-r.1   106437711   RAP domain-containing protein, chloroplastic 
 sot-r.1   102585574   uncharacterized LOC102585574 
 cit-r.1   102607518   RAP domain-containing protein, chloroplastic 
 nta-r.1   107769616   RAP domain-containing protein, chloroplastic 
 nta-r.1   107814648   RAP domain-containing protein, chloroplastic 
 cre-r.1   CHLRE_09g389541v5   uncharacterized protein 

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Top 50 coexpressed genes to 123077249 (tae-r.2 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123077249 (tae-r.2 coexpression data)

CoexMap"123077249"


taeLOC123077249 | Entrez gene ID : 123077249    
Species tae hvu bdi osa zma sbi ath gma sly vvi ppo mtr ghi bna sot cit nta cre bra
Paralog 3 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044528 [list] [network] regulation of mitochondrial mRNA stability  (3 genes)  IEA  
GO:0000963 [list] [network] mitochondrial RNA processing  (27 genes)  IEA  
GO:1901259 [list] [network] chloroplast rRNA processing  (54 genes)  IEA  
GO CC
GO:0035770 [list] [network] ribonucleoprotein granule  (87 genes)  IEA  
GO:0005759 [list] [network] mitochondrial matrix  (228 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (1890 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (4004 genes)  IEA  
Protein XP_044355418.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044355418.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_044355418.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

tae-r.2
for
123077249
tae-r.2
for
123060241
tae-r.2
for
123068747
hvu-r.1
for
123442779
bdi-r.1
for
100844423
osa-u.5
for
AL1
zma-u.5
for
103649620
sbi-r.1
for
8082831
ath-u.5
for
RAP
gma-u.5
for
100805208
gma-u.5
for
100794144
sly-u.5
for
101258337
vvi-u.5
for
100257808
ppo-u.5
for
18106372
mtr-u.5
for
25502299
ghi-r.1
for
107962352
ghi-r.1
for
107928108
bna-r.1
for
106387987
bna-r.1
for
106437711
sot-r.1
for
102585574
cit-r.1
for
102607518
nta-r.1
for
107769616
nta-r.1
for
107814648
cre-r.1
for
CHLRE_09g389541v5


Ortholog ID: 10015
Species tae tae tae hvu bdi osa zma sbi ath gma gma sly vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC123077249 LOC123060241 LOC123068747 LOC123442779 LOC100844423 AL1 LOC103649620 LOC8082831 RAP LOC100805208 LOC100794144 LOC101258337 LOC100257808 LOC18106372 LOC25502299 LOC107962352 LOC107928108 LOC106387987 LOC106437711 LOC102585574 LOC102607518 LOC107769616 LOC107814648 CHLRE_09g389541v5
Function* RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic Albino Leaf1 RAP RAP domain-containing protein, chloroplastic RAP RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic uncharacterized LOC102585574 RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123077249 123060241 123068747 123442779 100844423 4333151 103649620 8082831 817747 100805208 100794144 101258337 100257808 18106372 25502299 107962352 107928108 106387987 106437711 102585574 102607518 107769616 107814648 5720612
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