ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	DML2	demeter-like 2
ath-u.5	DML2	demeter-like 2
ath-r.7	DML2	demeter-like 2
ath-m.9	DML2	demeter-like 2
ath-e.2	DML2	demeter-like 2
ath-m.4.hor	DML2	demeter-like 2
ath-m.4.lig	DML2	demeter-like 2
ath-m.4.str	DML2	demeter-like 2
ath-m.4.tis	DML2	demeter-like 2
ath-u.5	DML1	demeter-like 1
ath-u.5	DML3	demeter-like protein 3
ath-u.5	DME	HhH-GPD base excision DNA repair family protein
bra-r.6	103847276	transcriptional activator DEMETER
bra-r.6	103842475	DEMETER-like protein 3
bra-r.6	103867278	DNA glycosylase/AP lyase ROS1
bna-r.1	106362333	DEMETER-like protein 3
bna-r.1	106372500	transcriptional activator DEMETER
bna-r.1	106396066	DNA glycosylase/AP lyase ROS1
ghi-r.1	107936635	transcriptional activator DEMETER
ghi-r.1	107922077	transcriptional activator DEMETER
ghi-r.1	107921883	transcriptional activator DEMETER
cit-r.1	DEMETER	transcriptional activator DEMETER
cit-r.1	102612881	DNA glycosylase/AP lyase ROS1
cit-r.1	102619180	DNA glycosylase/AP lyase ROS1-like
gma-u.5	100779756	DNA glycosylase/AP lyase ROS1
gma-u.5	100787368	protein ROS1A
vvi-u.5	100247223	transcriptional activator DEMETER
vvi-u.5	100257983	transcriptional activator DEMETER
ppo-u.5	7479830	transcriptional activator DEMETER
ppo-u.5	18100071	DNA glycosylase/AP lyase ROS1
mtr-u.5	25499391	transcriptional activator DEMETER
mtr-u.5	11424215	DNA glycosylase/AP lyase ROS1
sly-u.5	DML1	DNA demethylase1
sly-u.5	DML2	DNA demethylase 2
sly-u.5	DML4	DNA demethylase 4
sot-r.1	102594068	transcriptional activator DEMETER-like
sot-r.1	102605689	protein ROS1
sot-r.1	102597039	protein ROS1-like
nta-r.1	107759302	transcriptional activator DEMETER
nta-r.1	107760412	DNA glycosylase/AP lyase ROS1
nta-r.1	107778975	transcriptional activator DEMETER
osa-u.5	4338944	protein ROS1C-like
osa-u.5	9271145	protein ROS1A-like
osa-u.5	4329407	DNA glycosylase/AP lyase ROS1
zma-u.5	100382817	uncharacterized LOC100382817
zma-u.5	103630409	Protein ROS1
zma-u.5	109939959	protein ROS1A
tae-r.2	123068281	protein ROS1A
tae-r.2	123076835	DNA glycosylase/AP lyase ROS1
tae-r.2	123058129	protein ROS1C
hvu-r.1	123452140	protein ROS1A-like
hvu-r.1	123446041	protein ROS1C-like
hvu-r.1	123442421	protein ROS1A-like
sbi-r.1	8074739	protein ROS1
sbi-r.1	8072510	uncharacterized LOC8072510
sbi-r.1	8056049	protein ROS1
bdi-r.1	100841571	uncharacterized LOC100841571
bdi-r.1	100823585	protein ROS1
bdi-r.1	100823274	uncharacterized LOC100823274
cre-r.1	CHLRE_07g355466v5	uncharacterized protein

Top 50 coexpressed genes to DML2 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to DML2 (ath-m.4.bio coexpression data)

CoexMap"820162"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006284 [list] [network] base-excision repair

(21 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0035514 [list] [network] DNA demethylase activity	(14 genes)	IEA
GO:0019104 [list] [network] DNA N-glycosylase activity	(19 genes)	IEA

Protein

NP_001326647.1 [sequence] [blastp]
NP_187612.5 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001326647.1)
nucl 9	(predict for NP_187612.5)

Subcellular
localization
TargetP

other 8	(predict for NP_001326647.1)
other 8	(predict for NP_187612.5)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for DML2	ath-u.5 for DML2	ath-r.7 for DML2	ath-m.9 for DML2	ath-e.2 for DML2	ath-m.4.hor for DML2	ath-m.4.lig for DML2	ath-m.4.str for DML2	ath-m.4.tis for DML2	ath-u.5 for DML1	ath-u.5 for DML3	ath-u.5 for DME	bra-r.6 for 103847276	bra-r.6 for 103842475	bra-r.6 for 103867278	bna-r.1 for 106362333	bna-r.1 for 106372500	bna-r.1 for 106396066	ghi-r.1 for 107936635	ghi-r.1 for 107922077	ghi-r.1 for 107921883	cit-r.1 for DEMETER	cit-r.1 for 102612881	cit-r.1 for 102619180	gma-u.5 for 100779756	gma-u.5 for 100787368	vvi-u.5 for 100247223	vvi-u.5 for 100257983	ppo-u.5 for 7479830	ppo-u.5 for 18100071	mtr-u.5 for 25499391	mtr-u.5 for 11424215	sly-u.5 for DML1	sly-u.5 for DML2	sly-u.5 for DML4	sot-r.1 for 102594068	sot-r.1 for 102605689	sot-r.1 for 102597039	nta-r.1 for 107759302	nta-r.1 for 107760412	nta-r.1 for 107778975	osa-u.5 for 4338944	osa-u.5 for 9271145	osa-u.5 for 4329407	zma-u.5 for 100382817	zma-u.5 for 103630409	zma-u.5 for 109939959	tae-r.2 for 123068281	tae-r.2 for 123076835	tae-r.2 for 123058129	hvu-r.1 for 123452140	hvu-r.1 for 123446041	hvu-r.1 for 123442421	sbi-r.1 for 8074739	sbi-r.1 for 8072510	sbi-r.1 for 8056049	bdi-r.1 for 100841571	bdi-r.1 for 100823585	bdi-r.1 for 100823274	cre-r.1 for CHLRE_07g355466v5

Ortholog

Ortholog ID: 951

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DML1

DML3

DME

DEMETER

DML1

DML2

DML4

Function^*

demeter-like 1

demeter-like protein 3

HhH-GPD base excision DNA repair family protein

transcriptional activator DEMETER

DEMETER-like protein 3

DNA glycosylase/AP lyase ROS1

transcriptional activator DEMETER

transcriptional activator DEMETER-like

DNA glycosylase/AP lyase ROS1-like

transcriptional activator DEMETER

uncharacterized LOC107902775

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1

DNA glycosylase/AP lyase ROS1-like

DNA glycosylase/AP lyase ROS1

transcriptional activator DEMETER

DEMETER-like protein 3

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1

DNA demethylase1

DNA demethylase 2

DNA demethylase 4

transcriptional activator DEMETER-like

protein ROS1

protein ROS1-like

DNA glycosylase/AP lyase ROS1

protein ROS1A-like

protein ROS1C-like

protein ROS1A-like

uncharacterized LOC100382817

Protein ROS1

uncharacterized LOC100280151

transcriptional activator DEMETER

protein ROS1C

protein ROS1A-like

protein ROS1C-like

protein ROS1A-like

uncharacterized LOC8072510

protein ROS1

uncharacterized LOC100841571

protein ROS1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath04142	Lysosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	3
bra01200	Carbon metabolism	3
bra00010	Glycolysis / Gluconeogenesis	2
bra00020	Citrate cycle (TCA cycle)	2
bra00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta03022	Basal transcription factors	2
nta04120	Ubiquitin mediated proteolysis	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

818224

829552

830335

103847276

103842475

103867278

106372500

106433122

125609294

107918161

107959385

107902775

102630316

102612881

102619180

100788292

100806794

100247223

100257983

7479830

18096903

7491643

25483895

101244311

101263652

101251080

102594068

102605689

102597023

107760412

107813452

4338944

9271145

100382817

103630409

100280151

123059833

123064105

123141492

123452140

123446041

123442421

8072510

8056049

8061201

100841571

100823585

100844361

66054234

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	2	2	2	2	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to DML2 (ath-m.4.bio coexpression data)

Top 50 enrichment test to DML2 (ath-m.4.bio coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**