ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.bio	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-r.7	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.9	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-e.2	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.hor	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.lig	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.str	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.tis	AT3G18600	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT5G65900	DEA(D/H)-box RNA helicase family protein
bra-r.6	103859759	DEAD-box ATP-dependent RNA helicase 51
bra-r.6	103837961	DEAD-box ATP-dependent RNA helicase 51
bra-r.6	103869547	DEAD-box ATP-dependent RNA helicase 51
bna-r.1	106439550	DEAD-box ATP-dependent RNA helicase 51
bna-r.1	106391029	DEAD-box ATP-dependent RNA helicase 51-like
bna-r.1	125575855	DEAD-box ATP-dependent RNA helicase 27-like
ghi-r.1	107953363	DEAD-box ATP-dependent RNA helicase 51
ghi-r.1	107926589	DEAD-box ATP-dependent RNA helicase 51
ghi-r.1	107887059	DEAD-box ATP-dependent RNA helicase 51
cit-r.1	102619669	DEAD-box ATP-dependent RNA helicase 51
gma-u.5	100798885	DEAD-box ATP-dependent RNA helicase 27
gma-u.5	100798290	DEAD-box ATP-dependent RNA helicase 27
gma-u.5	100797375	DEAD-box ATP-dependent RNA helicase 27
vvi-u.5	100242258	DEAD-box ATP-dependent RNA helicase 27
ppo-u.5	7468000	DEAD-box ATP-dependent RNA helicase 51
ppo-u.5	18102018	DEAD-box ATP-dependent RNA helicase 51-like
mtr-u.5	25486792	DEAD-box ATP-dependent RNA helicase 27
mtr-u.5	11441584	DEAD-box ATP-dependent RNA helicase 27
mtr-u.5	11438740	DEAD-box ATP-dependent RNA helicase 51
sly-u.5	101245343	DEAD-box ATP-dependent RNA helicase 51
sot-r.1	102597715	DEAD-box ATP-dependent RNA helicase 51-like
nta-r.1	107794494	DEAD-box ATP-dependent RNA helicase 51
nta-r.1	107806417	DEAD-box ATP-dependent RNA helicase 27
osa-u.5	4334469	DEAD-box ATP-dependent RNA helicase 27-like
zma-u.5	103640803	DEAD-box ATP-dependent RNA helicase 27
zma-u.5	100501728	DEAD-box ATP-dependent RNA helicase 51
tae-r.2	123120056	DEAD-box ATP-dependent RNA helicase 27
hvu-r.1	123399846	DEAD-box ATP-dependent RNA helicase 27
sbi-r.1	8061145	DEAD-box ATP-dependent RNA helicase 27
sbi-r.1	8066029	putative DEAD-box ATP-dependent RNA helicase 51
bdi-r.1	104584763	DEAD-box ATP-dependent RNA helicase 27
cre-r.1	CHLRE_07g314900v5	uncharacterized protein

Top 50 coexpressed genes to AT3G18600 (ath-m.4.bio coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G18600 (ath-m.4.bio coexpression data)

CoexMap"821391"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005730 [list] [network] nucleolus	(394 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	RCA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0003724 [list] [network] RNA helicase activity

(42 genes)

IEA

Protein

NP_188490.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, nucl 2

(predict for NP_188490.1)

Subcellular
localization
TargetP

other 8

(predict for NP_188490.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.bio for AT3G18600	ath-u.5 for AT3G18600	ath-r.7 for AT3G18600	ath-m.9 for AT3G18600	ath-e.2 for AT3G18600	ath-m.4.hor for AT3G18600	ath-m.4.lig for AT3G18600	ath-m.4.str for AT3G18600	ath-m.4.tis for AT3G18600	ath-u.5 for AT5G65900	bra-r.6 for 103859759	bra-r.6 for 103837961	bra-r.6 for 103869547	bna-r.1 for 106439550	bna-r.1 for 106391029	bna-r.1 for 125575855	ghi-r.1 for 107953363	ghi-r.1 for 107926589	ghi-r.1 for 107887059	cit-r.1 for 102619669	gma-u.5 for 100798885	gma-u.5 for 100798290	gma-u.5 for 100797375	vvi-u.5 for 100242258	ppo-u.5 for 7468000	ppo-u.5 for 18102018	mtr-u.5 for 25486792	mtr-u.5 for 11441584	mtr-u.5 for 11438740	sly-u.5 for 101245343	sot-r.1 for 102597715	nta-r.1 for 107794494	nta-r.1 for 107806417	osa-u.5 for 4334469	zma-u.5 for 103640803	zma-u.5 for 100501728	tae-r.2 for 123120056	hvu-r.1 for 123399846	sbi-r.1 for 8061145	sbi-r.1 for 8066029	bdi-r.1 for 104584763	cre-r.1 for CHLRE_07g314900v5

Ortholog

Ortholog ID: 3222

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

DEA(D/H)-box RNA helicase family protein

DEAD-box ATP-dependent RNA helicase 51