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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.bio   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-r.7   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.9   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-e.2   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.hor   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.lig   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.str   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-m.4.tis   PDE247   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103836512   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 bna-r.1   125577196   pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like 
 bna-r.1   106365686   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 ghi-r.1   107889204   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 ghi-r.1   107891578   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 cit-r.1   102609207   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 gma-u.5   100792726   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 vvi-u.5   100249599   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 ppo-u.5   7478495   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 mtr-u.5   112419508   pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like 
 mtr-u.5   11409652   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 sly-u.5   101256843   pentatricopeptide repeat-containing protein 
 sot-r.1   102587859   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 nta-r.1   107818941   pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like 
 nta-r.1   107789171   pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like 
 osa-u.5   4330860   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 zma-u.5   103654223   pentatricopeptide repeat-containing protein, chloroplastic-like 
 hvu-r.1   123401892   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 
 bdi-r.1   100826046   pentatricopeptide repeat-containing protein At1g05750, chloroplastic 

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Top 50 coexpressed genes to PDE247 (ath-m.4.bio coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE247 (ath-m.4.bio coexpression data)

CoexMap"837083"


athPDE247 | Entrez gene ID : 837083      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma hvu bdi tae sbi cre
Paralog 9 1 2 2 1 1 1 1 2 1 1 2 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (230 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001322717.1 [sequence] [blastp]
NP_172066.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  cyto 1,  plas 1,  extr 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for NP_001322717.1)
chlo 7,  nucl 1,  cyto 1,  plas 1,  extr 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for NP_172066.3)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001322717.1)
chlo 7  (predict for NP_172066.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.bio
for
PDE247
ath-u.5
for
PDE247
ath-r.7
for
PDE247
ath-m.9
for
PDE247
ath-e.2
for
PDE247
ath-m.4.hor
for
PDE247
ath-m.4.lig
for
PDE247
ath-m.4.str
for
PDE247
ath-m.4.tis
for
PDE247
bra-r.6
for
103836512
bna-r.1
for
125577196
bna-r.1
for
106365686
ghi-r.1
for
107889204
ghi-r.1
for
107891578
cit-r.1
for
102609207
gma-u.5
for
100792726
vvi-u.5
for
100249599
ppo-u.5
for
7478495
mtr-u.5
for
112419508
mtr-u.5
for
11409652
sly-u.5
for
101256843
sot-r.1
for
102587859
nta-r.1
for
107818941
nta-r.1
for
107789171
osa-u.5
for
4330860
zma-u.5
for
103654223
hvu-r.1
for
123401892
bdi-r.1
for
100826046


Ortholog ID: 9198
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr sly sot nta nta osa zma tae hvu bdi
Symbol PDE247 LOC103836512 LOC125577196 LOC106365686 LOC107889204 LOC107891578 LOC102609207 LOC100792726 LOC100249599 LOC7478495 LOC112419508 LOC11409652 LOC101256843 LOC102587859 LOC107818941 LOC107789171 LOC4330860 LOC103654223 LOC123138409 LOC123401892 LOC100826046
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein, chloroplastic-like pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic pentatricopeptide repeat-containing protein At1g05750, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837083 103836512 125577196 106365686 107889204 107891578 102609207 100792726 100249599 7478495 112419508 11409652 101256843 102587859 107818941 107789171 4330860 103654223 123138409 123401892 100826046
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