ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100837530	uncharacterized LOC100837530
bdi-r.1	100844096	uncharacterized LOC100844096
tae-r.2	123053602	uncharacterized LOC123053602
tae-r.2	123151170	nucleolin
tae-r.2	123155540	nucleolin
hvu-r.1	123412421	nucleolin-like
hvu-r.1	123426982	protein gar2
osa-u.5	4345972	nuclear localization sequence-binding protein
osa-u.5	9266635	uncharacterized LOC9266635
zma-u.5	103654496	nucleolin
zma-u.5	103646328	RNA binding (RRM/RBD/RNP motifs) family protein
zma-u.5	100383360	RNA binding (RRM/RBD/RNP motifs) family protein
sbi-r.1	8055188	nucleolin 1
sbi-r.1	8058695	uncharacterized LOC8058695
ath-u.5	AT3G12640	RNA binding (RRM/RBD/RNP motifs) family protein
gma-u.5	100817963	nucleolin 2
gma-u.5	100787464	uncharacterized LOC100787464
sly-u.5	101267843	protein gar2
bra-r.6	103859459	nucleolar protein 12
bra-r.6	103845348	protein gar2
vvi-u.5	100855398	uncharacterized LOC100855398
ppo-u.5	7480090	uncharacterized LOC7480090
ppo-u.5	7482274	uncharacterized LOC7482274
mtr-u.5	11446344	uncharacterized LOC11446344
mtr-u.5	11425456	nucleolin 2
ghi-r.1	107919807	uncharacterized LOC107919807
ghi-r.1	107926185	uncharacterized LOC107926185
bna-r.1	106401217	protein gar2-like
bna-r.1	106351482	protein gar2
bna-r.1	106353099	nucleolar protein 12-like
sot-r.1	102596742	uncharacterized LOC102596742
cit-r.1	102624141	uncharacterized LOC102624141
nta-r.1	107820553	uncharacterized LOC107820553
nta-r.1	107772006	uncharacterized LOC107772006

Annotation

functional annotation

KEGG

GO BP

GO:0043488 [list] [network] regulation of mRNA stability	(38 genes)	IEA
GO:0006397 [list] [network] mRNA processing	(225 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(2880 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4615 genes)	IEA

GO MF

GO:0008143 [list] [network] poly(A) binding

(5 genes)

IEA

Protein

XP_003579952.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, mito 1, plas 1, pero 1, chlo_mito 1, cyto_mito 1

(predict for XP_003579952.1)

Subcellular
localization
TargetP

other 9

(predict for XP_003579952.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100837530	bdi-r.1 for 100844096	tae-r.2 for 123053602	tae-r.2 for 123151170	tae-r.2 for 123155540	hvu-r.1 for 123412421	hvu-r.1 for 123426982	osa-u.5 for 4345972	osa-u.5 for 9266635	zma-u.5 for 103654496	zma-u.5 for 103646328	zma-u.5 for 100383360	sbi-r.1 for 8055188	sbi-r.1 for 8058695	ath-u.5 for AT3G12640	gma-u.5 for 100817963	gma-u.5 for 100787464	sly-u.5 for 101267843	bra-r.6 for 103859459	bra-r.6 for 103845348	vvi-u.5 for 100855398	ppo-u.5 for 7480090	ppo-u.5 for 7482274	mtr-u.5 for 11446344	mtr-u.5 for 11425456	ghi-r.1 for 107919807	ghi-r.1 for 107926185	bna-r.1 for 106401217	bna-r.1 for 106351482	bna-r.1 for 106353099	sot-r.1 for 102596742	cit-r.1 for 102624141	nta-r.1 for 107820553	nta-r.1 for 107772006

Ortholog

Ortholog ID: 5104

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC100837530

uncharacterized LOC100844096

uncharacterized LOC123053602

nucleolin

nucleolin-like

protein gar2

nuclear localization sequence-binding protein

uncharacterized LOC9266635

nucleolin

RNA binding (RRM/RBD/RNP motifs) family protein

uncharacterized LOC100282490

nucleolin 1

uncharacterized LOC8058695

RNA binding (RRM/RBD/RNP motifs) family protein

nucleolin 2

uncharacterized LOC100787464

protein gar2

nucleolar protein 12

protein gar2

uncharacterized LOC100855398

uncharacterized LOC7480090

uncharacterized LOC7482274

uncharacterized LOC11446344

nucleolin 2

uncharacterized LOC107919807

uncharacterized LOC107926185

protein gar2-like

protein gar2

protein gar2-like

uncharacterized LOC102596742

uncharacterized LOC102624141

uncharacterized LOC107820553

uncharacterized LOC107772006

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03040	Spliceosome	4
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03250	Viral life cycle - HIV-1	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03013	Nucleocytoplasmic transport	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi04016	MAPK signaling pathway - plant	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta00900	Terpenoid backbone biosynthesis	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

100837530

100844096

123053602

123151170

123155540

123412421

123426982

4345972

9266635

103654496

103646328

100282490

8055188

8058695

820444

100817963

100787464

101267843

103859459

103845348

100855398

7480090

7482274

11446344

11425456

107919807

107926185

106401217

106351482

106377479

102596742

102624141

107820553

107772006

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100837530 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100837530 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	3	2	1	2	1	2	1	2	2	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100837530 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100837530 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**