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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   103654496   nucleolin 
 zma-r.6   103654496   nucleolin 
 zma-m.5   103654496   nucleolin 
 zma-u.5   103646328   RNA binding (RRM/RBD/RNP motifs) family protein 
 zma-u.5   100383360   RNA binding (RRM/RBD/RNP motifs) family protein 
 zma-u.5   100282490   uncharacterized LOC100282490 
 sbi-r.1   8055188   nucleolin 1 
 sbi-r.1   8058695   uncharacterized LOC8058695 
 osa-u.5   4345972   nuclear localization sequence-binding protein 
 osa-u.5   9266635   uncharacterized LOC9266635 
 tae-r.2   123155540   nucleolin 
 tae-r.2   123163778   nucleolin 
 tae-r.2   123151170   nucleolin 
 hvu-r.1   123412421   nucleolin-like 
 hvu-r.1   123426982   protein gar2 
 bdi-r.1   100844096   uncharacterized LOC100844096 
 bdi-r.1   100837530   uncharacterized LOC100837530 
 ath-u.5   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100817963   nucleolin 2 
 gma-u.5   100787464   uncharacterized LOC100787464 
 sly-u.5   101267843   protein gar2 
 bra-r.6   103859459   nucleolar protein 12 
 bra-r.6   103845348   protein gar2 
 vvi-u.5   100855398   uncharacterized LOC100855398 
 ppo-u.5   7482274   uncharacterized LOC7482274 
 ppo-u.5   7480090   uncharacterized LOC7480090 
 mtr-u.5   11446344   uncharacterized LOC11446344 
 mtr-u.5   11425456   nucleolin 2 
 ghi-r.1   107926185   uncharacterized LOC107926185 
 ghi-r.1   107919807   uncharacterized LOC107919807 
 bna-r.1   106377479   protein gar2-like 
 bna-r.1   106353099   nucleolar protein 12-like 
 bna-r.1   106351482   protein gar2 
 sot-r.1   102596742   uncharacterized LOC102596742 
 cit-r.1   102624141   uncharacterized LOC102624141 
 nta-r.1   107820553   uncharacterized LOC107820553 
 nta-r.1   107772006   uncharacterized LOC107772006 

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Top 50 coexpressed genes to 103654496 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103654496 (zma-u.5 coexpression data)

CoexMap"103654496"


zmaLOC103654496 | Entrez gene ID : 103654496      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 6 2 2 3 2 2 1 2 1 2 1 2 2 2 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043488 [list] [network] regulation of mRNA stability  (62 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5465 genes)  IEA  
GO MF
GO:0008143 [list] [network] poly(A) binding  (11 genes)  IEA  
Protein XP_008679545.1 [sequence] [blastp]
XP_020408401.1 [sequence] [blastp]
XP_020408402.1 [sequence] [blastp]
XP_035823396.1 [sequence] [blastp]
XP_035823397.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  mito 1  (predict for XP_008679545.1)
nucl 9,  chlo 1,  pero 1  (predict for XP_020408401.1)
nucl 9,  chlo 1,  pero 1  (predict for XP_020408402.1)
nucl 9,  chlo 1,  pero 1  (predict for XP_035823396.1)
nucl 9,  chlo 1,  pero 1  (predict for XP_035823397.1)
Subcellular
localization
TargetP
other 9  (predict for XP_008679545.1)
other 7  (predict for XP_020408401.1)
other 7  (predict for XP_020408402.1)
other 7  (predict for XP_035823396.1)
other 7  (predict for XP_035823397.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
103654496
zma-r.6
for
103654496
zma-m.5
for
103654496
zma-u.5
for
103646328
zma-u.5
for
100383360
zma-u.5
for
100282490
sbi-r.1
for
8055188
sbi-r.1
for
8058695
osa-u.5
for
4345972
osa-u.5
for
9266635
tae-r.2
for
123155540
tae-r.2
for
123163778
tae-r.2
for
123151170
hvu-r.1
for
123412421
hvu-r.1
for
123426982
bdi-r.1
for
100844096
bdi-r.1
for
100837530
ath-u.5
for
AT3G12640
gma-u.5
for
100817963
gma-u.5
for
100787464
sly-u.5
for
101267843
bra-r.6
for
103859459
bra-r.6
for
103845348
vvi-u.5
for
100855398
ppo-u.5
for
7482274
ppo-u.5
for
7480090
mtr-u.5
for
11446344
mtr-u.5
for
11425456
ghi-r.1
for
107926185
ghi-r.1
for
107919807
bna-r.1
for
106377479
bna-r.1
for
106353099
bna-r.1
for
106351482
sot-r.1
for
102596742
cit-r.1
for
102624141
nta-r.1
for
107820553
nta-r.1
for
107772006


Ortholog ID: 5104
Species zma zma zma sbi sbi osa osa tae tae tae hvu hvu bdi bdi ath gma gma sly bra bra vvi ppo ppo mtr mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC103654496 LOC103646328 LOC100282490 LOC8055188 LOC8058695 LOC4345972 LOC9266635 LOC123155540 LOC123151170 LOC123053602 LOC123412421 LOC123426982 LOC100844096 LOC100837530 AT3G12640 LOC100817963 LOC100787464 LOC101267843 LOC103859459 LOC103845348 LOC100855398 LOC7482274 LOC7480090 LOC11446344 LOC11425456 LOC107926185 LOC107919807 LOC106377479 LOC106351482 LOC106401217 LOC102596742 LOC102624141 LOC107820553 LOC107772006
Function* nucleolin RNA binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC100282490 nucleolin 1 uncharacterized LOC8058695 nuclear localization sequence-binding protein uncharacterized LOC9266635 nucleolin nucleolin uncharacterized LOC123053602 nucleolin-like protein gar2 uncharacterized LOC100844096 uncharacterized LOC100837530 RNA binding (RRM/RBD/RNP motifs) family protein nucleolin 2 uncharacterized LOC100787464 protein gar2 nucleolar protein 12 protein gar2 uncharacterized LOC100855398 uncharacterized LOC7482274 uncharacterized LOC7480090 uncharacterized LOC11446344 nucleolin 2 uncharacterized LOC107926185 uncharacterized LOC107919807 protein gar2-like protein gar2 protein gar2-like uncharacterized LOC102596742 uncharacterized LOC102624141 uncharacterized LOC107820553 uncharacterized LOC107772006
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta00900 Terpenoid backbone biosynthesis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103654496 103646328 100282490 8055188 8058695 4345972 9266635 123155540 123151170 123053602 123412421 123426982 100844096 100837530 820444 100817963 100787464 101267843 103859459 103845348 100855398 7482274 7480090 11446344 11425456 107926185 107919807 106377479 106351482 106401217 102596742 102624141 107820553 107772006
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