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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.9   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100817963   nucleolin 2 
 gma-u.5   100787464   uncharacterized LOC100787464 
 vvi-u.5   100855398   uncharacterized LOC100855398 
 ppo-u.5   7480090   uncharacterized LOC7480090 
 ppo-u.5   7482274   uncharacterized LOC7482274 
 mtr-u.5   11446344   uncharacterized LOC11446344 
 mtr-u.5   11425456   nucleolin 2 
 sly-u.5   101267843   protein gar2 
 osa-u.5   4345972   nuclear localization sequence-binding protein 
 osa-u.5   9266635   uncharacterized LOC9266635 
 zma-u.5   103654496   nucleolin 
 zma-u.5   103646328   RNA binding (RRM/RBD/RNP motifs) family protein 
 zma-u.5   100383360   RNA binding (RRM/RBD/RNP motifs) family protein 

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Top 50 coexpressed genes to AT3G12640 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G12640 (ath-u.5 coexpression data)

CoexMap"820444"


athAT3G12640 | Entrez gene ID : 820444      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 9 2 1 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001325953.1 [sequence] [blastp]
NP_001325954.1 [sequence] [blastp]
NP_001325955.1 [sequence] [blastp]
NP_566430.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001325953.1)
nucl 10  (predict for NP_001325954.1)
nucl 10  (predict for NP_001325955.1)
nucl 9  (predict for NP_566430.3)
Subcellular
localization
TargetP
other 9  (predict for NP_001325953.1)
other 9  (predict for NP_001325954.1)
other 9  (predict for NP_001325955.1)
other 9  (predict for NP_566430.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G12640
ath-r.7
for
AT3G12640
ath-m.9
for
AT3G12640
ath-e.2
for
AT3G12640
ath-m.4.bio
for
AT3G12640
ath-m.4.hor
for
AT3G12640
ath-m.4.lig
for
AT3G12640
ath-m.4.str
for
AT3G12640
ath-m.4.tis
for
AT3G12640
gma-u.5
for
100817963
gma-u.5
for
100787464
vvi-u.5
for
100855398
ppo-u.5
for
7480090
ppo-u.5
for
7482274
mtr-u.5
for
11446344
mtr-u.5
for
11425456
sly-u.5
for
101267843
osa-u.5
for
4345972
osa-u.5
for
9266635
zma-u.5
for
103654496
zma-u.5
for
103646328
zma-u.5
for
100383360


Ortholog ID: 5104
Species ath bra bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol AT3G12640 LOC103859459 LOC103845348 LOC106377479 LOC106351482 LOC107926185 LOC107919807 LOC102624141 LOC100787464 LOC100817963 LOC100855398 LOC7480090 LOC7482274 LOC11446344 LOC11425456 LOC101267843 LOC102596742 LOC107820553 LOC107772006 LOC4345972 LOC9266635 LOC103654496 LOC103646328 LOC123053602 LOC123151170 LOC123426982 LOC123412421 LOC8058695 LOC8055188 LOC100844096 LOC100837530
Function* RNA binding (RRM/RBD/RNP motifs) family protein nucleolar protein 12 protein gar2 protein gar2-like protein gar2 uncharacterized LOC107926185 uncharacterized LOC107919807 uncharacterized LOC102624141 uncharacterized LOC100787464 nucleolin 2 uncharacterized LOC100855398 uncharacterized LOC7480090 uncharacterized LOC7482274 uncharacterized LOC11446344 nucleolin 2 protein gar2 uncharacterized LOC102596742 uncharacterized LOC107820553 uncharacterized LOC107772006 nuclear localization sequence-binding protein uncharacterized LOC9266635 nucleolin RNA binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC123053602 nucleolin protein gar2 nucleolin-like uncharacterized LOC8058695 nucleolin 1 uncharacterized LOC100844096 uncharacterized LOC100837530
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta00900 Terpenoid backbone biosynthesis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820444 103859459 103845348 106377479 106351482 107926185 107919807 102624141 100787464 100817963 100855398 7480090 7482274 11446344 11425456 101267843 102596742 107820553 107772006 4345972 9266635 103654496 103646328 123053602 123151170 123426982 123412421 8058695 8055188 100844096 100837530
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