ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100843379	spliceosome-associated protein 130 A
tae-r.2	123136182	spliceosome-associated protein 130 A
tae-r.2	123143694	spliceosome-associated protein 130 A
tae-r.2	123132158	spliceosome-associated protein 130 A
hvu-r.1	123404214	spliceosome-associated protein 130 A-like
osa-u.5	4328237	spliceosome-associated protein 130 A
zma-u.5	100272422	uncharacterized LOC100272422
sbi-r.1	8057539	spliceosome-associated protein 130 A
ath-u.5	SAP130a	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
ath-u.5	SAP130b	Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
gma-u.5	100800457	spliceosome-associated protein 130 A
gma-u.5	100775785	spliceosome-associated protein 130 A
sly-u.5	101266504	spliceosome-associated protein 130 A
bra-r.6	103847020	spliceosome-associated protein 130 A
vvi-u.5	100255210	spliceosome-associated protein 130 A
ppo-u.5	7458613	spliceosome-associated protein 130 A
ppo-u.5	7457908	spliceosome-associated protein 130 A
mtr-u.5	11442895	spliceosome-associated protein 130 A
mtr-u.5	25485734	spliceosome-associated protein 130 A
mtr-u.5	11444450	spliceosome-associated protein 130 A
ghi-r.1	107926073	spliceosome-associated protein 130 A
ghi-r.1	107897773	spliceosome-associated protein 130 A
ghi-r.1	107930724	spliceosome-associated protein 130 A
bna-r.1	106352352	spliceosome-associated protein 130 A
bna-r.1	106433276	spliceosome-associated protein 130 A-like
sot-r.1	102606375	splicing factor 3B subunit 3-like
cit-r.1	102619030	spliceosome-associated protein 130 A
nta-r.1	107780494	spliceosome-associated protein 130 A
nta-r.1	107779569	spliceosome-associated protein 130 A
cre-r.1	CHLRE_08g372800v5	uncharacterized protein

Top 50 coexpressed genes to 100843379 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100843379 (bdi-r.1 coexpression data)

CoexMap"100843379"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi03040 [list] [network] Spliceosome (282 genes)

GO BP

GO:0000398 [list] [network] mRNA splicing, via spliceosome

(166 genes)

IEA

GO CC

GO:0005686 [list] [network] U2 snRNP	(23 genes)	IEA
GO:0005634 [list] [network] nucleus	(2880 genes)	IEA

GO MF

GO:0030620 [list] [network] U2 snRNA binding	(5 genes)	IEA
GO:0005515 [list] [network] protein binding	(4040 genes)	IEA

Protein

XP_003574320.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 2, plas 1, vacu 1, E.R. 1, pero 1, golg_plas 1, cysk_plas 1, mito_plas 1, cyto_plas 1

(predict for XP_003574320.1)

Subcellular
localization
TargetP

mito 6

(predict for XP_003574320.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100843379	tae-r.2 for 123136182	tae-r.2 for 123143694	tae-r.2 for 123132158	hvu-r.1 for 123404214	osa-u.5 for 4328237	zma-u.5 for 100272422	sbi-r.1 for 8057539	ath-u.5 for SAP130a	ath-u.5 for SAP130b	gma-u.5 for 100800457	gma-u.5 for 100775785	sly-u.5 for 101266504	bra-r.6 for 103847020	vvi-u.5 for 100255210	ppo-u.5 for 7458613	ppo-u.5 for 7457908	mtr-u.5 for 11442895	mtr-u.5 for 25485734	mtr-u.5 for 11444450	ghi-r.1 for 107926073	ghi-r.1 for 107897773	ghi-r.1 for 107930724	bna-r.1 for 106352352	bna-r.1 for 106433276	sot-r.1 for 102606375	cit-r.1 for 102619030	nta-r.1 for 107780494	nta-r.1 for 107779569	cre-r.1 for CHLRE_08g372800v5

Ortholog

Ortholog ID: 7253

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SAP130a

SAP130b

Function^*