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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SAP130b   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-r.7   SAP130b   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-e.2   SAP130b   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-u.5   SAP130a   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 bra-r.6   103847020   spliceosome-associated protein 130 A 
 bna-r.1   106352352   spliceosome-associated protein 130 A 
 bna-r.1   106433276   spliceosome-associated protein 130 A-like 
 ghi-r.1   107926073   spliceosome-associated protein 130 A 
 ghi-r.1   107897773   spliceosome-associated protein 130 A 
 ghi-r.1   107959892   spliceosome-associated protein 130 A 
 cit-r.1   102619030   spliceosome-associated protein 130 A 
 gma-u.5   100800457   spliceosome-associated protein 130 A 
 gma-u.5   100775785   spliceosome-associated protein 130 A 
 vvi-u.5   100255210   spliceosome-associated protein 130 A 
 ppo-u.5   7458613   spliceosome-associated protein 130 A 
 ppo-u.5   7457908   spliceosome-associated protein 130 A 
 mtr-u.5   11444450   spliceosome-associated protein 130 A 
 mtr-u.5   11442895   spliceosome-associated protein 130 A 
 mtr-u.5   25485734   spliceosome-associated protein 130 A 
 sly-u.5   101266504   spliceosome-associated protein 130 A 
 sot-r.1   102606375   splicing factor 3B subunit 3-like 
 nta-r.1   107780494   spliceosome-associated protein 130 A 
 nta-r.1   107779569   spliceosome-associated protein 130 A 
 osa-u.5   4328237   spliceosome-associated protein 130 A 
 zma-u.5   100272422   uncharacterized LOC100272422 
 tae-r.2   123136182   spliceosome-associated protein 130 A 
 tae-r.2   123132158   spliceosome-associated protein 130 A 
 tae-r.2   123143694   spliceosome-associated protein 130 A 
 hvu-r.1   123404214   spliceosome-associated protein 130 A-like 
 sbi-r.1   8057539   spliceosome-associated protein 130 A 
 bdi-r.1   100843379   spliceosome-associated protein 130 A 
 cre-r.1   CHLRE_08g372800v5   uncharacterized protein 

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Top 50 coexpressed genes to SAP130b (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SAP130b (ath-u.5 coexpression data)

CoexMap"824688"


athSAP130b | Entrez gene ID : 824688    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 3 1 2 1 2 3 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0055046 [list] [network] microgametogenesis  (63 genes)  IMP  
GO:0048481 [list] [network] plant ovule development  (68 genes)  IMP  
GO:0009846 [list] [network] pollen germination  (77 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA RCA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_567016.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cyto 1,  plas 1,  pero 1,  cysk 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_567016.1)
Subcellular
localization
TargetP
scret 3  (predict for NP_567016.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SAP130b
ath-r.7
for
SAP130b
ath-e.2
for
SAP130b
ath-u.5
for
SAP130a
bra-r.6
for
103847020
bna-r.1
for
106352352
bna-r.1
for
106433276
ghi-r.1
for
107926073
ghi-r.1
for
107897773
ghi-r.1
for
107959892
cit-r.1
for
102619030
gma-u.5
for
100800457
gma-u.5
for
100775785
vvi-u.5
for
100255210
ppo-u.5
for
7458613
ppo-u.5
for
7457908
mtr-u.5
for
11444450
mtr-u.5
for
11442895
mtr-u.5
for
25485734
sly-u.5
for
101266504
sot-r.1
for
102606375
nta-r.1
for
107780494
nta-r.1
for
107779569
osa-u.5
for
4328237
zma-u.5
for
100272422
tae-r.2
for
123136182
tae-r.2
for
123132158
tae-r.2
for
123143694
hvu-r.1
for
123404214
sbi-r.1
for
8057539
bdi-r.1
for
100843379
cre-r.1
for
CHLRE_08g372800v5


Ortholog ID: 7253
Species ath ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol SAP130b SAP130a LOC103847020 LOC106352352 LOC106433276 LOC107926073 LOC107959892 LOC107930724 LOC102619030 LOC100800457 LOC100775785 LOC100255210 LOC7458613 LOC7457908 LOC11444450 LOC11442895 LOC25485734 LOC101266504 LOC102606375 LOC107780494 LOC107779569 LOC4328237 LOC100272422 LOC123136182 LOC123132158 LOC123143694 LOC123404214 LOC8057539 LOC100843379 CHLRE_08g372800v5
Function* Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Cleavage and polyadenylation specificity factor (CPSF) A subunit protein spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A-like spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A splicing factor 3B subunit 3-like spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A uncharacterized LOC100272422 spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A-like spliceosome-associated protein 130 A spliceosome-associated protein 130 A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 2
ath03082 ATP-dependent chromatin remodeling 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03440 Homologous recombination 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03013 Nucleocytoplasmic transport 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 4
gma00220 Arginine biosynthesis 2
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00270 Cysteine and methionine metabolism 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 12
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 15
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824688 824686 103847020 106352352 106433276 107926073 107959892 107930724 102619030 100800457 100775785 100255210 7458613 7457908 11444450 11442895 25485734 101266504 102606375 107780494 107779569 4328237 100272422 123136182 123132158 123143694 123404214 8057539 100843379 5726872
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