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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   106352352   spliceosome-associated protein 130 A 
 ath-u.5   SAP130a   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-u.5   SAP130b   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 gma-u.5   100800457   spliceosome-associated protein 130 A 
 gma-u.5   100775785   spliceosome-associated protein 130 A 
 vvi-u.5   100255210   spliceosome-associated protein 130 A 
 ppo-u.5   7457908   spliceosome-associated protein 130 A 
 ppo-u.5   7458613   spliceosome-associated protein 130 A 
 mtr-u.5   11444450   spliceosome-associated protein 130 A 
 mtr-u.5   25485734   spliceosome-associated protein 130 A 
 mtr-u.5   11442895   spliceosome-associated protein 130 A 
 sly-u.5   101266504   spliceosome-associated protein 130 A 
 osa-u.5   4328237   spliceosome-associated protein 130 A 
 zma-u.5   100272422   uncharacterized LOC100272422 

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Top 50 coexpressed genes to 106352352 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 106352352 (bna-r.1 coexpression data)

CoexMap"106352352"


bnaLOC106352352 | Entrez gene ID : 106352352    
Species bna ath gma vvi ppo mtr sly osa zma sot hvu tae cit sbi ghi cre nta bdi bra
Paralog 1 2 2 1 2 3 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03040 [list] [network] Spliceosome (912 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (548 genes)  IEA  
GO CC
GO:0005686 [list] [network] U2 snRNP  (88 genes)  IEA  
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0030620 [list] [network] U2 snRNA binding  (25 genes)  IEA  
GO:0005515 [list] [network] protein binding  (12789 genes)  IEA  
Protein XP_013647456.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  vacu 2,  cysk_nucl 1,  cyto 1,  plas 1,  extr 1,  cyto_plas 1  (predict for XP_013647456.1)
Subcellular
localization
TargetP
other 2  (predict for XP_013647456.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
106352352

.
ath-u.5
for
SAP130a

.
ath-u.5
for
SAP130b

.
gma-u.5
for
100800457

.
gma-u.5
for
100775785

.
vvi-u.5
for
100255210

.
ppo-u.5
for
7457908

.
ppo-u.5
for
7458613

.
mtr-u.5
for
11444450

.
mtr-u.5
for
25485734

.
mtr-u.5
for
11442895

.
sly-u.5
for
101266504

.
osa-u.5
for
4328237

.
zma-u.5
for
100272422

.


Ortholog ID: 7253
Species ath ath gma gma sly osa zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SAP130a SAP130b LOC100775785 LOC100800457 LOC101266504 LOC4328237 LOC100272422 LOC103847020 LOC100255210 LOC7458613 LOC7457908 LOC25485734 LOC11442895 LOC123143694 LOC123136182 LOC123404214 LOC107926073 LOC107959892 LOC106352352 LOC106433276 CHLRE_08g372800v5 LOC8057539 LOC102606375 LOC102619030 LOC100843379 LOC107780494 LOC107779569
Function* Cleavage and polyadenylation specificity factor (CPSF) A subunit protein Cleavage and polyadenylation specificity factor (CPSF) A subunit protein spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A uncharacterized LOC100272422 spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A-like spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A-like uncharacterized protein spliceosome-associated protein 130 A splicing factor 3B subunit 3-like spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A spliceosome-associated protein 130 A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 6
ath03013 Nucleocytoplasmic transport 2
ath03082 ATP-dependent chromatin remodeling 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 4
gma00220 Arginine biosynthesis 2
gma00240 Pyrimidine metabolism 2
gma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03440 Homologous recombination 2
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00270 Cysteine and methionine metabolism 2
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 12
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 14
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03013 Nucleocytoplasmic transport 2
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824686 824688 100775785 100800457 101266504 4328237 100272422 103847020 100255210 7458613 7457908 25485734 11442895 123143694 123136182 123404214 107926073 107959892 106352352 106433276 5726872 8057539 102606375 102619030 100843379 107780494 107779569
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