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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g027150v5   uncharacterized protein 
 ath-u.5   EMB25   DEAD/DEAH box helicase 
 gma-u.5   100780908   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 sly-u.5   101246924   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 osa-u.5   4330670   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 zma-u.5   103627701   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 bra-r.6   103831550   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 vvi-u.5   100253458   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 ppo-u.5   7492412   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 mtr-u.5   11413717   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 tae-r.2   123145542   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 tae-r.2   123138288   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 tae-r.2   123128420   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 hvu-r.1   123400978   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 ghi-r.1   107903689   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 ghi-r.1   107886318   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 bna-r.1   106347226   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic-like 
 bna-r.1   106429555   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 sbi-r.1   8075739   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 sot-r.1   102584107   DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic 
 cit-r.1   102612885   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 bdi-r.1   100842242   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 nta-r.1   107809361   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 
 nta-r.1   107802326   DExH-box ATP-dependent RNA helicase DExH15 chloroplastic-like 

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Top 50 coexpressed genes to CHLRE_01g027150v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g027150v5 (cre-r.1 coexpression data)

CoexMap"5715305"


creCHLRE_01g027150v5 | Entrez gene ID : 5715305    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 1 1 1 1 1 1 1 1 3 1 2 2 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070478 [list] [network] nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay  (2 genes)  IEA  
GO CC
GO:0055087 [list] [network] Ski complex  (3 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (44 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (290 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (1484 genes)  IEA  
Protein XP_042928489.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  golg 1  (predict for XP_042928489.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_042928489.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g027150v5
ath-u.5
for
EMB25
gma-u.5
for
100780908
sly-u.5
for
101246924
osa-u.5
for
4330670
zma-u.5
for
103627701
bra-r.6
for
103831550
vvi-u.5
for
100253458
ppo-u.5
for
7492412
mtr-u.5
for
11413717
tae-r.2
for
123145542
tae-r.2
for
123138288
tae-r.2
for
123128420
hvu-r.1
for
123400978
ghi-r.1
for
107903689
ghi-r.1
for
107886318
bna-r.1
for
106347226
bna-r.1
for
106429555
sbi-r.1
for
8075739
sot-r.1
for
102584107
cit-r.1
for
102612885
bdi-r.1
for
100842242
nta-r.1
for
107809361
nta-r.1
for
107802326


Ortholog ID: 11114
Species cre ath gma sly osa zma bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_01g027150v5 EMB25 LOC100780908 LOC101246924 LOC4330670 LOC103627701 LOC103831550 LOC100253458 LOC7492412 LOC11413717 LOC123145542 LOC123138288 LOC123128420 LOC123400978 LOC107903689 LOC107886318 LOC106347226 LOC106429555 LOC8075739 LOC102584107 LOC102612885 LOC100842242 LOC107809361 LOC107802326
Function* uncharacterized protein DEAD/DEAH box helicase DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic-like DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic DExH-box ATP-dependent RNA helicase DExH15 chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
vvi00051 Fructose and mannose metabolism 2
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5715305 843343 100780908 101246924 4330670 103627701 103831550 100253458 7492412 11413717 123145542 123138288 123128420 123400978 107903689 107886318 106347226 106429555 8075739 102584107 102612885 100842242 107809361 107802326
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