ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
cre-r.1	CHLRE_14g621000v5	uncharacterized protein
ath-u.5	AT5G41770	crooked neck protein, putative / cell cycle protein
gma-u.5	100811745	crooked neck-like protein 1
gma-u.5	100791616	crooked neck-like protein 1
sly-u.5	101245441	uncharacterized LOC101245441
sly-u.5	101257538	uncharacterized LOC101257538
osa-u.5	4338298	uncharacterized LOC4338298
zma-u.5	103643760	crooked neck-like protein 1
bra-r.6	103864120	crooked neck-like protein 1
bra-r.6	103850228	crooked neck-like protein 1
vvi-u.5	100255371	crooked neck-like protein 1
ppo-u.5	7479272	uncharacterized LOC7479272
ppo-u.5	7458229	uncharacterized LOC7458229
mtr-u.5	11439028	crooked neck-like protein 1
mtr-u.5	11426099	crooked neck-like protein 1
tae-r.2	123155830	crooked neck-like protein 1
tae-r.2	123147940	crooked neck-like protein 1
tae-r.2	123163807	crooked neck-like protein 1
hvu-r.1	123413606	crooked neck-like protein 1
ghi-r.1	107904473	crooked neck-like protein 1
ghi-r.1	107924173	crooked neck-like protein 1
bna-r.1	106446317	crooked neck-like protein 1
bna-r.1	106440929	crooked neck-like protein 1
bna-r.1	106406050	crooked neck-like protein 1
sbi-r.1	8076963	crooked neck-like protein 1
sbi-r.1	8054178	crooked neck-like protein 1
sot-r.1	102594042	crooked neck-like protein 1
sot-r.1	102604573	crooked neck-like protein 1
cit-r.1	102620269	uncharacterized LOC102620269
bdi-r.1	100829074	crooked neck-like protein 1
nta-r.1	107781942	uncharacterized LOC107781942
nta-r.1	107790486	uncharacterized LOC107790486

Top 50 coexpressed genes to CHLRE_14g621000v5 (cre-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to CHLRE_14g621000v5 (cre-r.1 coexpression data)

CoexMap"5715897"

[Cytoscape]

Annotation

functional annotation

KEGG

cre03040 [list] [network] Spliceosome (105 genes)

GO BP

GO:0000245 [list] [network] spliceosomal complex assembly	(9 genes)	IEA
GO:0000398 [list] [network] mRNA splicing, via spliceosome	(103 genes)	IEA

GO CC

GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome	(5 genes)	IEA
GO:0000974 [list] [network] Prp19 complex	(9 genes)	IEA
GO:0071014 [list] [network] post-mRNA release spliceosomal complex	(10 genes)	IEA
GO:0071011 [list] [network] precatalytic spliceosome	(26 genes)	IEA

GO MF

GO:0005515 [list] [network] protein binding

(1927 genes)

IEA

Protein

XP_042916853.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 4, mito 1

(predict for XP_042916853.1)

Subcellular
localization
TargetP

other 7

(predict for XP_042916853.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_14g621000v5	ath-u.5 for AT5G41770	gma-u.5 for 100811745	gma-u.5 for 100791616	sly-u.5 for 101245441	sly-u.5 for 101257538	osa-u.5 for 4338298	zma-u.5 for 103643760	bra-r.6 for 103864120	bra-r.6 for 103850228	vvi-u.5 for 100255371	ppo-u.5 for 7479272	ppo-u.5 for 7458229	mtr-u.5 for 11439028	mtr-u.5 for 11426099	tae-r.2 for 123155830	tae-r.2 for 123147940	tae-r.2 for 123163807	hvu-r.1 for 123413606	ghi-r.1 for 107904473	ghi-r.1 for 107924173	bna-r.1 for 106446317	bna-r.1 for 106440929	bna-r.1 for 106406050	sbi-r.1 for 8076963	sbi-r.1 for 8054178	sot-r.1 for 102594042	sot-r.1 for 102604573	cit-r.1 for 102620269	bdi-r.1 for 100829074	nta-r.1 for 107781942	nta-r.1 for 107790486

Ortholog

Ortholog ID: 5736

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

Function^*

uncharacterized protein

crooked neck protein, putative / cell cycle protein

crooked neck-like protein 1

uncharacterized LOC101245441

uncharacterized LOC101257538

uncharacterized LOC4338298

crooked neck-like protein 1

uncharacterized LOC7479272

uncharacterized LOC7458229

crooked neck-like protein 1

uncharacterized LOC102620269

crooked neck-like protein 1

uncharacterized LOC107781942

uncharacterized LOC107790486

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma00970	Aminoacyl-tRNA biosynthesis	4
gma03015	mRNA surveillance pathway	3
gma03022	Basal transcription factors	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	10
gma03015	mRNA surveillance pathway	5
gma03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	4
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna00510	N-Glycan biosynthesis	2
bna00513	Various types of N-glycan biosynthesis	2
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	7
bna00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03082	ATP-dependent chromatin remodeling	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03013	Nucleocytoplasmic transport	3
bdi04120	Ubiquitin mediated proteolysis	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	3
nta03040	Spliceosome	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

5715897

834182

100811745

100791616

101245441

101257538

4338298

103643760

103864120

103850228

100255371

7479272

7458229

11439028

11426099

123155830

123147940

123163807

123413606

107904473

107924173

106440929

106406050

125576576

8076963

8054178

102594042

102604573

102620269

100829074

107781942

107790486

The preparation time of this page was 0.1 [sec].


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	2	2	1	1	2	1	2	2	3	1	2	3	2	2	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_14g621000v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_14g621000v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**