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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-r.7   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.9   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-e.2   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.4.bio   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.4.hor   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.4.lig   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.4.str   AT5G41770   crooked neck protein, putative / cell cycle protein 
 ath-m.4.tis   AT5G41770   crooked neck protein, putative / cell cycle protein 
 bra-r.6   103864120   crooked neck-like protein 1 
 bra-r.6   103850228   crooked neck-like protein 1 
 bna-r.1   106446317   crooked neck-like protein 1 
 bna-r.1   106440929   crooked neck-like protein 1 
 bna-r.1   106406050   crooked neck-like protein 1 
 ghi-r.1   107924173   crooked neck-like protein 1 
 ghi-r.1   107904473   crooked neck-like protein 1 
 cit-r.1   102620269   uncharacterized LOC102620269 
 gma-u.5   100811745   crooked neck-like protein 1 
 gma-u.5   100791616   crooked neck-like protein 1 
 vvi-u.5   100255371   crooked neck-like protein 1 
 ppo-u.5   7458229   uncharacterized LOC7458229 
 ppo-u.5   7479272   uncharacterized LOC7479272 
 mtr-u.5   11439028   crooked neck-like protein 1 
 mtr-u.5   11426099   crooked neck-like protein 1 
 sly-u.5   101257538   uncharacterized LOC101257538 
 sly-u.5   101245441   uncharacterized LOC101245441 
 sot-r.1   102604573   crooked neck-like protein 1 
 sot-r.1   102594042   crooked neck-like protein 1 
 nta-r.1   107790486   uncharacterized LOC107790486 
 nta-r.1   107781942   uncharacterized LOC107781942 
 osa-u.5   4338298   uncharacterized LOC4338298 
 zma-u.5   103643760   crooked neck-like protein 1 
 tae-r.2   123147940   crooked neck-like protein 1 
 tae-r.2   123155830   crooked neck-like protein 1 
 tae-r.2   123163807   crooked neck-like protein 1 
 hvu-r.1   123413606   crooked neck-like protein 1 
 sbi-r.1   8054178   crooked neck-like protein 1 
 sbi-r.1   8076963   crooked neck-like protein 1 
 bdi-r.1   100829074   crooked neck-like protein 1 
 cre-r.1   CHLRE_14g621000v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G41770 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G41770 (ath-u.5 coexpression data)

CoexMap"834182"


athAT5G41770 | Entrez gene ID : 834182      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 2 2 2 2 2 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_198992.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  chlo 1,  cysk 1  (predict for NP_198992.2)
Subcellular
localization
TargetP
other 8  (predict for NP_198992.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT5G41770
ath-r.7
for
AT5G41770
ath-m.9
for
AT5G41770
ath-e.2
for
AT5G41770
ath-m.4.bio
for
AT5G41770
ath-m.4.hor
for
AT5G41770
ath-m.4.lig
for
AT5G41770
ath-m.4.str
for
AT5G41770
ath-m.4.tis
for
AT5G41770
bra-r.6
for
103864120
bra-r.6
for
103850228
bna-r.1
for
106446317
bna-r.1
for
106440929
bna-r.1
for
106406050
ghi-r.1
for
107924173
ghi-r.1
for
107904473
cit-r.1
for
102620269
gma-u.5
for
100811745
gma-u.5
for
100791616
vvi-u.5
for
100255371
ppo-u.5
for
7458229
ppo-u.5
for
7479272
mtr-u.5
for
11439028
mtr-u.5
for
11426099
sly-u.5
for
101257538
sly-u.5
for
101245441
sot-r.1
for
102604573
sot-r.1
for
102594042
nta-r.1
for
107790486
nta-r.1
for
107781942
osa-u.5
for
4338298
zma-u.5
for
103643760
tae-r.2
for
123147940
tae-r.2
for
123155830
tae-r.2
for
123163807
hvu-r.1
for
123413606
sbi-r.1
for
8054178
sbi-r.1
for
8076963
bdi-r.1
for
100829074
cre-r.1
for
CHLRE_14g621000v5


Ortholog ID: 5736
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol AT5G41770 LOC103864120 LOC103850228 LOC106440929 LOC106406050 LOC125576576 LOC107924173 LOC107904473 LOC102620269 LOC100811745 LOC100791616 LOC100255371 LOC7458229 LOC7479272 LOC11439028 LOC11426099 LOC101257538 LOC101245441 LOC102604573 LOC102594042 LOC107790486 LOC107781942 LOC4338298 LOC103643760 LOC123147940 LOC123155830 LOC123163807 LOC123413606 LOC8054178 LOC8076963 LOC100829074 CHLRE_14g621000v5
Function* crooked neck protein, putative / cell cycle protein crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC102620269 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC7458229 uncharacterized LOC7479272 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC101257538 uncharacterized LOC101245441 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized LOC107790486 uncharacterized LOC107781942 uncharacterized LOC4338298 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 crooked neck-like protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 4
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00510 N-Glycan biosynthesis 2
bna00513 Various types of N-glycan biosynthesis 2
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma00970 Aminoacyl-tRNA biosynthesis 4
gma03015 mRNA surveillance pathway 3
gma03022 Basal transcription factors 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 10
gma03015 mRNA surveillance pathway 5
gma03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03040 Spliceosome 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834182 103864120 103850228 106440929 106406050 125576576 107924173 107904473 102620269 100811745 100791616 100255371 7458229 7479272 11439028 11426099 101257538 101245441 102604573 102594042 107790486 107781942 4338298 103643760 123147940 123155830 123163807 123413606 8054178 8076963 100829074 5715897
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