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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_04g218850v5   uncharacterized protein 
 ath-u.5   MEE49   Ribosomal RNA processing Brix domain protein 
 gma-u.5   100791194   ribosome production factor 1 
 gma-u.5   100785331   Brix domain-containing protein 
 sly-u.5   101259402   uncharacterized LOC101259402 
 osa-u.5   4340048   uncharacterized LOC4340048 
 zma-u.5   100273986   uncharacterized LOC100273986 
 bra-r.6   103836813   ribosome production factor 1 
 vvi-u.5   100263155   uncharacterized LOC100263155 
 vvi-u.5   100266185   uncharacterized LOC100266185 
 ppo-u.5   7487755   uncharacterized LOC7487755 
 ppo-u.5   7455374   uncharacterized LOC7455374 
 mtr-u.5   25500582   ribosome production factor 1 
 tae-r.2   123087878   ribosome production factor 1 
 tae-r.2   123166624   ribosome production factor 1 
 tae-r.2   123150023   ribosome production factor 1 
 hvu-r.1   123408094   ribosome production factor 1-like 
 hvu-r.1   123411263   ribosome production factor 1-like 
 ghi-r.1   107954412   ribosome production factor 1 
 ghi-r.1   107937025   ribosome production factor 1 
 bna-r.1   106426594   ribosome production factor 1 
 bna-r.1   125577654   ribosome production factor 1-like 
 sbi-r.1   8068415   ribosome production factor 1 
 sot-r.1   102599817   ribosome production factor 1-like 
 cit-r.1   102608771   uncharacterized LOC102608771 
 bdi-r.1   100833727   ribosome production factor 1 
 nta-r.1   107817240   uncharacterized LOC107817240 
 nta-r.1   107780918   uncharacterized LOC107780918 

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Top 50 coexpressed genes to CHLRE_04g218850v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_04g218850v5 (cre-r.1 coexpression data)

CoexMap"5717842"


creCHLRE_04g218850v5 | Entrez gene ID : 5717842      
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 1 2 2 1 3 2 2 2 1 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000470 [list] [network] maturation of LSU-rRNA  (19 genes)  IEA  
GO:0000460 [list] [network] maturation of 5.8S rRNA  (26 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (23 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0042134 [list] [network] rRNA primary transcript binding  (2 genes)  IEA  
Protein XP_042925199.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  cysk_nucl 2,  cyto 1,  mito 1  (predict for XP_042925199.1)
Subcellular
localization
TargetP
other 7  (predict for XP_042925199.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_04g218850v5
ath-u.5
for
MEE49
gma-u.5
for
100791194
gma-u.5
for
100785331
sly-u.5
for
101259402
osa-u.5
for
4340048
zma-u.5
for
100273986
bra-r.6
for
103836813
vvi-u.5
for
100263155
vvi-u.5
for
100266185
ppo-u.5
for
7487755
ppo-u.5
for
7455374
mtr-u.5
for
25500582
tae-r.2
for
123087878
tae-r.2
for
123166624
tae-r.2
for
123150023
hvu-r.1
for
123408094
hvu-r.1
for
123411263
ghi-r.1
for
107954412
ghi-r.1
for
107937025
bna-r.1
for
106426594
bna-r.1
for
125577654
sbi-r.1
for
8068415
sot-r.1
for
102599817
cit-r.1
for
102608771
bdi-r.1
for
100833727
nta-r.1
for
107817240
nta-r.1
for
107780918


Ortholog ID: 8551
Species cre ath gma gma sly osa zma bra vvi vvi ppo ppo mtr tae tae tae hvu hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol CHLRE_04g218850v5 MEE49 LOC100791194 LOC100785331 LOC101259402 LOC4340048 LOC100273986 LOC103836813 LOC100263155 LOC100266185 LOC7487755 LOC7455374 LOC25500582 LOC123087878 LOC123166624 LOC123150023 LOC123408094 LOC123411263 LOC107954412 LOC107937025 LOC106426594 LOC125577654 LOC8068415 LOC102599817 LOC102608771 LOC100833727 LOC107817240 LOC107780918
Function* uncharacterized protein Ribosomal RNA processing Brix domain protein ribosome production factor 1 Brix domain-containing protein uncharacterized LOC101259402 uncharacterized LOC4340048 uncharacterized LOC100273986 ribosome production factor 1 uncharacterized LOC100263155 uncharacterized LOC100266185 uncharacterized LOC7487755 uncharacterized LOC7455374 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like ribosome production factor 1-like ribosome production factor 1 ribosome production factor 1 ribosome production factor 1 ribosome production factor 1-like ribosome production factor 1 ribosome production factor 1-like uncharacterized LOC102608771 ribosome production factor 1 uncharacterized LOC107817240 uncharacterized LOC107780918
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
cre03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03010 Ribosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03015 mRNA surveillance pathway 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5717842 828136 100791194 100785331 101259402 4340048 100273986 103836813 100263155 100266185 7487755 7455374 25500582 123087878 123166624 123150023 123408094 123411263 107954412 107937025 106426594 125577654 8068415 102599817 102608771 100833727 107817240 107780918
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