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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_12g538500v5   uncharacterized protein 
 ath-u.5   AT5G11240   transducin family protein / WD-40 repeat family protein 
 gma-u.5   102667004   WD repeat-containing protein 43 
 gma-u.5   100815458   WD repeat-containing protein 43 
 sly-u.5   101243653   uncharacterized LOC101243653 
 osa-u.5   4332567   uncharacterized LOC4332567 
 zma-u.5   103634524   transducin family protein / WD-40 repeat family protein 
 bra-r.6   103846739   WD repeat-containing protein 43 
 bra-r.6   103850762   WD repeat-containing protein 43 
 vvi-u.5   100251740   uncharacterized LOC100251740 
 ppo-u.5   7496504   uncharacterized LOC7496504 
 mtr-u.5   11420256   uncharacterized LOC11420256 
 tae-r.2   123112472   uncharacterized LOC123112472 
 tae-r.2   123097717   uncharacterized LOC123097717 
 tae-r.2   123085629   uncharacterized LOC123085629 
 hvu-r.1   123448861   uncharacterized LOC123448861 
 ghi-r.1   107888936   WD repeat-containing protein 43 
 ghi-r.1   107891849   WD repeat-containing protein 43 
 bna-r.1   106415791   WD repeat-containing protein 43 
 bna-r.1   106372422   WD repeat-containing protein 43-like 
 bna-r.1   106383509   WD repeat-containing protein 43 
 sbi-r.1   8081109   uncharacterized LOC8081109 
 sot-r.1   102578394   WD repeat-containing protein 43 
 cit-r.1   102623293   uncharacterized LOC102623293 
 bdi-r.1   100843293   WD repeat-containing protein 43 
 nta-r.1   107817394   uncharacterized LOC107817394 
 nta-r.1   107796022   uncharacterized LOC107796022 

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Top 50 coexpressed genes to CHLRE_12g538500v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_12g538500v5 (cre-r.1 coexpression data)

CoexMap"5718445"


creCHLRE_12g538500v5 | Entrez gene ID : 5718445    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 1 2 1 1 1 2 1 1 1 3 1 2 3 1 1 1 1 2
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0000462 [list] [network] maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (29 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (1927 genes)  IEA  
Protein XP_042918791.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 3,  pero 3,  cyto_pero 3,  chlo 1,  nucl 1,  cyto_E.R. 1  (predict for XP_042918791.1)
Subcellular
localization
TargetP
other 4,  chlo 3  (predict for XP_042918791.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_12g538500v5
ath-u.5
for
AT5G11240
gma-u.5
for
102667004
gma-u.5
for
100815458
sly-u.5
for
101243653
osa-u.5
for
4332567
zma-u.5
for
103634524
bra-r.6
for
103846739
bra-r.6
for
103850762
vvi-u.5
for
100251740
ppo-u.5
for
7496504
mtr-u.5
for
11420256
tae-r.2
for
123112472
tae-r.2
for
123097717
tae-r.2
for
123085629
hvu-r.1
for
123448861
ghi-r.1
for
107888936
ghi-r.1
for
107891849
bna-r.1
for
106415791
bna-r.1
for
106372422
bna-r.1
for
106383509
sbi-r.1
for
8081109
sot-r.1
for
102578394
cit-r.1
for
102623293
bdi-r.1
for
100843293
nta-r.1
for
107817394
nta-r.1
for
107796022


Ortholog ID: 7711
Species cre ath gma gma sly osa zma bra bra vvi ppo mtr tae tae tae hvu ghi ghi bna bna bna sbi sot cit bdi nta nta
Symbol CHLRE_12g538500v5 AT5G11240 LOC100815458 LOC100784148 LOC101243653 LOC4332567 LOC103634524 LOC103846739 LOC103850762 LOC100251740 LOC7496504 LOC11420256 LOC123112472 LOC123097717 LOC123085629 LOC123448861 LOC107888936 LOC107891849 LOC106415791 LOC106372422 LOC106383509 LOC8081109 LOC102578394 LOC102623293 LOC100843293 LOC107817394 LOC107796022
Function* uncharacterized protein transducin family protein / WD-40 repeat family protein WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC101243653 uncharacterized LOC4332567 transducin family protein / WD-40 repeat family protein WD repeat-containing protein 43 WD repeat-containing protein 43 uncharacterized LOC100251740 uncharacterized LOC7496504 uncharacterized LOC11420256 uncharacterized LOC123112472 uncharacterized LOC123097717 uncharacterized LOC123085629 uncharacterized LOC123448861 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43 WD repeat-containing protein 43-like WD repeat-containing protein 43 uncharacterized LOC8081109 WD repeat-containing protein 43 uncharacterized LOC102623293 WD repeat-containing protein 43 uncharacterized LOC107817394 uncharacterized LOC107796022
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 8
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma00230 Purine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01232 Nucleotide metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 7
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03040 Spliceosome 4
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 6
nta03008 Ribosome biogenesis in eukaryotes 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5718445 830994 100815458 100784148 101243653 4332567 103634524 103846739 103850762 100251740 7496504 11420256 123112472 123097717 123085629 123448861 107888936 107891849 106415791 106372422 106383509 8081109 102578394 102623293 100843293 107817394 107796022
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