ATTED-II : GeneCoexpression result

Species	Gene	Description
cre-r.1	CHLRE_13g564350v5	uncharacterized protein
ath-u.5	ATM	Serine/Threonine-kinase ATM-like protein
gma-u.5	100788458	serine/threonine-protein kinase ATM
sly-u.5	101253578	serine/threonine-protein kinase ATM
osa-u.5	4326151	serine/threonine-protein kinase ATM
zma-u.5	103651852	serine/threonine-protein kinase ATM
bra-r.6	103873550	serine/threonine-protein kinase ATM
vvi-u.5	100250198	serine/threonine-protein kinase ATM
ppo-u.5	7454490	serine/threonine-protein kinase ATM
mtr-u.5	11443014	serine/threonine-protein kinase ATM
tae-r.2	123182586	serine/threonine-protein kinase ATM
tae-r.2	123139615	serine/threonine-protein kinase ATM
tae-r.2	123062353	serine/threonine-protein kinase ATM
hvu-r.1	123442347	serine/threonine-protein kinase ATM
ghi-r.1	121206048	serine/threonine-protein kinase ATM
ghi-r.1	107892485	serine/threonine-protein kinase ATM
ghi-r.1	107933634	serine/threonine-protein kinase ATM
bna-r.1	106434303	serine/threonine-protein kinase ATM
bna-r.1	111199007	serine/threonine-protein kinase ATM
sbi-r.1	8072354	serine/threonine-protein kinase ATM
sot-r.1	102596182	serine/threonine-protein kinase ATM
cit-r.1	102620162	serine/threonine-protein kinase ATM
bdi-r.1	100845900	serine/threonine-protein kinase ATM
nta-r.1	107763003	serine/threonine-protein kinase ATM
nta-r.1	107828155	serine/threonine-protein kinase ATM

Annotation

functional annotation

KEGG

GO BP

GO:0006974 [list] [network] DNA damage response

(258 genes)

IEA

GO CC

GO MF

GO:0004674 [list] [network] protein serine/threonine kinase activity	(211 genes)	IEA
GO:0005515 [list] [network] protein binding	(1927 genes)	IEA

Protein

XP_042917206.1 [sequence] [blastp]
XP_042917207.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, cyto 4, nucl 1, E.R. 1, cysk 1, cysk_nucl 1	(predict for XP_042917206.1)
plas 6, cyto 4	(predict for XP_042917207.1)

Subcellular
localization
TargetP

other 8	(predict for XP_042917206.1)
other 8	(predict for XP_042917207.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	cre-r.1 for CHLRE_13g564350v5	ath-u.5 for ATM	gma-u.5 for 100788458	sly-u.5 for 101253578	osa-u.5 for 4326151	zma-u.5 for 103651852	bra-r.6 for 103873550	vvi-u.5 for 100250198	ppo-u.5 for 7454490	mtr-u.5 for 11443014	tae-r.2 for 123182586	tae-r.2 for 123139615	tae-r.2 for 123062353	hvu-r.1 for 123442347	ghi-r.1 for 121206048	ghi-r.1 for 107892485	ghi-r.1 for 107933634	bna-r.1 for 106434303	bna-r.1 for 111199007	sbi-r.1 for 8072354	sot-r.1 for 102596182	cit-r.1 for 102620162	bdi-r.1 for 100845900	nta-r.1 for 107763003	nta-r.1 for 107828155

Ortholog

Ortholog ID: 10137

Species

cre

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

sbi

sot

cit

bdi

nta

Symbol

ATM

Function^*

uncharacterized protein

Serine/Threonine-kinase ATM-like protein

serine/threonine-protein kinase ATM

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2
ppo04136	Autophagy - other	2
ppo04518	Integrin signaling	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	4
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	4
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6
tae03440	Homologous recombination	4
tae03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03013	Nucleocytoplasmic transport	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03440	Homologous recombination	2
ghi03013	Nucleocytoplasmic transport	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	4
bna03450	Non-homologous end-joining	4
bna03420	Nucleotide excision repair	2
bna00564	Glycerophospholipid metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	4
bna03450	Non-homologous end-joining	4
bna03420	Nucleotide excision repair	2
bna00564	Glycerophospholipid metabolism	2
bna04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

5719003

823975

100788458

101253578

4326151

103651852

103873550

100250198

7454490

11443014

123182586

123139615

123062353

123442347

121206048

107892485

107933634

106434303

111199007

8072354

102596182

102620162

100845900

107763003

107828155

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to CHLRE_13g564350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g564350v5 (cre-r.1 coexpression data)


Species	cre	ath	gma	sly	osa	zma	bra	vvi	ppo	mtr	tae	hvu	ghi	bna	sbi	sot	cit	bdi	nta
Paralog	1	1	1	1	1	1	1	1	1	1	3	1	3	2	1	1	1	1	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to CHLRE_13g564350v5 (cre-r.1 coexpression data)

Top 50 enrichment test to CHLRE_13g564350v5 (cre-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**